Alternatives and similar repositories for RiboNN

Users that are interested in RiboNN are comparing it to the libraries listed below

• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 9 months ago
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated 2 years ago
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆23Updated last year
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 4 months ago
• ShenLab / gMVP
  ☆21Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• ThomasCMcLean / LazyAF
  Code for LazyAF pipeline
  ☆20Updated last year
• ntranoslab / esm-variants
  ☆78Updated last year
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated last month
• TencentAILabHealthcare / DeepAIR
  ☆38Updated 2 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 2 weeks ago
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆30Updated last year
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated last year
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• OATML / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆66Updated 3 years ago
• chenhcs / DIFFUSE
  Deep learning based prediction of IsoForm FUnctions from Sequences and Expression
  ☆15Updated last month
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆51Updated 6 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆40Updated last year
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• hexavier / CUSTOM
  Codon optimizer for tissue-specific expression
  ☆17Updated 11 months ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆13Updated 4 months ago
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆31Updated 2 years ago
• sinc-lab / miRe2e
  ☆14Updated 2 years ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated 11 months ago