Alternatives and similar repositories for sradownloader

Users that are interested in sradownloader are comparing it to the libraries listed below

• bjmt / universalmotif
  Motif manipulation functions for R.
  ☆30Updated 3 months ago
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆26Updated last year
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆52Updated last month
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• zhongw2 / GeneTEFlow
  ☆23Updated 4 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆46Updated 9 months ago
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆39Updated 11 months ago
• djhn75 / RNAEditor
  ☆15Updated 3 years ago
• stephenturner / mergelanes
  Merge fastq files split over lanes
  ☆20Updated 7 years ago
• gexijin / shinygo
  ☆33Updated last month
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆24Updated 2 years ago
• Xinglab / rMATS-long
  ☆34Updated last month
• ashleymaeconard / TIMEOR
  TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R
  ☆17Updated 3 years ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆64Updated last year
• crazyhottommy / pyflow-RNAseq
  RNAseq pipeline based on snakemake
  ☆26Updated 2 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆62Updated 3 months ago
• Xinglab / SEASTAR
  SEASTAR - Systematic Evaluation of Alternative transcription STArt site in RNA
  ☆14Updated 7 years ago
• mhalushka / miRge3.0
  Comprehensive analysis of small RNA sequencing data
  ☆34Updated 7 months ago
• nf-core / rnasplice
  rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis
  ☆63Updated 7 months ago
• Searchlight2 / Searchlight2
  Rapid analysis and visualisation for bulk RNA-seq, psuedo-bulk RNA-seq, GeoMx and Proteomic datasets.
  ☆30Updated last year
• apcamargo / tspex
  tspex: tissue-specificity calculator
  ☆36Updated 2 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆64Updated 8 months ago
• XueyiDong / LongReadBenchmark
  Benchmarking long-read RNA-seq analysis tools
  ☆27Updated 10 months ago
• frattalab / splicing
  Snakemake pipeline for running MAJIQ
  ☆23Updated 2 years ago
• shimlab / BLAZE
  SingleCell Nanopore sequencing data analysis
  ☆62Updated 7 months ago
• snystrom / memes
  An R interface to the MEME Suite
  ☆54Updated this week
• oicr-gsi / sequenza
  Workflow for Sequenza, cellularity and ploidy
  ☆25Updated 4 months ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• Xinglab / lr2rmats
  Long read to rMATS
  ☆32Updated 2 years ago