A script to make downloading of SRA/GEO data easier
☆34Jun 30, 2026Updated 3 months ago
Alternatives and similar repositories for sradownloader
Users that are interested in sradownloader are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Identify one or more connected, focally amplified genomic regions to elucidate the architecture of focal amplifications such as ecDNA.☆13Sep 22, 2026Updated 3 weeks ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Mar 24, 2021Updated 5 years ago
- ☆29Jul 18, 2026Updated 3 months ago
- Comprehensive and scalable differential splicing analyses☆18Dec 19, 2025Updated 9 months ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- A repository for the lessons and notebooks used for Binder tutorials☆20Aug 4, 2020Updated 6 years ago
- CITEViz: Replicating the Interactive Flow Cytometry Workflow in CITE-Seq☆11Jun 6, 2024Updated 2 years ago
- RPHAST: Phylogenetic Analysis with Space/Time Models in R☆12Nov 25, 2024Updated last year
- ☆18May 12, 2023Updated 3 years ago
- Single cell isoform heterogeneity and differential alternative splicing analysis☆14Sep 14, 2025Updated last year
- long-read depth breaking☆12Apr 19, 2018Updated 8 years ago
- ☆17Feb 16, 2024Updated 2 years ago
- An R package to calculate carbon footprints from air travel based on IATA airport codes or latitude and longitude.☆18Jul 31, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆19Aug 25, 2026Updated last month
- Alternative Splicing ToolKit☆10Oct 29, 2025Updated 11 months ago
- Extract Sequence from Genome According to Annotation File☆41Apr 16, 2025Updated last year
- A neural network model to predict splice site usage and splicing-altering mutations☆17Jul 24, 2025Updated last year
- This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for singl…☆19Oct 12, 2021Updated 5 years ago
- Score an Affinity Purification Mass Spectrometry Proteomics Experiment for Interactor Confidence☆11Jun 24, 2015Updated 11 years ago
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆122Jan 15, 2023Updated 3 years ago
- ☆33May 2, 2022Updated 4 years ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆21Jun 13, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- R package colortools☆19Mar 27, 2022Updated 4 years ago
- SCASA: Single cell transcript quantification tool☆23Nov 24, 2023Updated 2 years ago
- Calculate the dn/ds (also pn and ps) value of cds☆14Jul 11, 2020Updated 6 years ago
- An adaptable Snakemake workflow which uses GATKs best practice recommendations to perform germline mutation calling starting with BAM fil…☆11Sep 17, 2021Updated 5 years ago
- ☆11May 14, 2025Updated last year
- R tools for analysis and visualization of single-cell subclustering data☆19Aug 28, 2026Updated last month
- Metascape for Bioinformaticians (MSBio)☆14Jun 30, 2021Updated 5 years ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆18Feb 23, 2026Updated 7 months ago
- Code referenced in the manuscript 'The 16S rRNA gene for species and strain-level microbiome analysis'☆11Sep 26, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This bartender version could handle arbitrary length of barcode☆34Sep 24, 2026Updated 3 weeks ago
- MGKit: Metagenomics Framework☆14Oct 31, 2022Updated 3 years ago
- [Archived] SnakeMake pipeline to run BlobTools on public assemblies☆11Jul 3, 2023Updated 3 years ago
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆60Aug 6, 2023Updated 3 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated last month
- Prefix-renaming FASTA records really fast.☆18Jun 26, 2024Updated 2 years ago
- ☆13Apr 7, 2023Updated 3 years ago