uc-bd2k / GREP2Links
GEO RNA-seq Experiments Processing Pipeline
☆21Updated 5 years ago
Alternatives and similar repositories for GREP2
Users that are interested in GREP2 are comparing it to the libraries listed below
Sorting:
- ☆24Updated last month
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 2 months ago
- Explore the cancer relevance of your gene list☆51Updated 4 months ago
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated 2 weeks ago
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆17Updated 6 years ago
- Python function for TMB snake plots☆16Updated 4 years ago
- Gene-level general linear mixed model☆22Updated 5 months ago
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated 2 years ago
- ☆28Updated last year
- Course Materials for Genomics Data Mining☆22Updated last month
- R wrapper for utilizing the SigProfilerMatrixGenerator framework☆20Updated 2 years ago
- Code for EpiMap data browser☆14Updated last year
- ☆10Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Toolbox package for organizing and working with TCGA data☆28Updated this week
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- rbioapi: User-Friendly R Interface to Biologic Web Services' API☆22Updated 2 weeks ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last month
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Introduction to single cell RNAseq data analysis and interpretation course work provided by Harvard Informatics Team.☆16Updated 6 years ago
- R package for plotting 3D graphical visualization of multi-omics data.☆22Updated 3 years ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- ☆16Updated 2 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- R package for Flexible dot plots☆29Updated 3 years ago