Alternatives and similar repositories for GREP2

Users that are interested in GREP2 are comparing it to the libraries listed below

• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆52Updated 3 weeks ago
• waldronlab / MultiAssayWorkshop
  Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment
  ☆24Updated 6 months ago
• mkanai / grimon
  R package for plotting 3D graphical visualization of multi-omics data.
  ☆23Updated 3 years ago
• liuhong-jia / scAnno
  ☆26Updated 7 months ago
• montilab / hypeR
  An R Package for Geneset Enrichment Workflows
  ☆76Updated last month
• montilab / BS831
  Course Materials for Genomics Data Mining
  ☆22Updated 3 months ago
• leekgroup / networks_correction
  Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"
  ☆16Updated 6 years ago
• myles-lewis / glmmSeq
  Gene-level general linear mixed model
  ☆24Updated 3 months ago
• carpentries-incubator / bioc-rnaseq
  Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
  ☆26Updated last week
• BUStools / BUS_notebooks_R
  R vignettes for processing BUS format single-cell RNA-seq files
  ☆21Updated 5 years ago
• KatrionaGoldmann / volcano3D
  An R package to plot interactive three-way differential expression analysis
  ☆38Updated this week
• stephenturner / msigdf
  Molecular Signatures Database (MSigDB) in a data frame
  ☆16Updated 7 years ago
• Bioconductor / BiocWorkshops2019
  The official repository of the Bioconductor 2019 Conference Workshops
  ☆24Updated 2 years ago
• qingjian1991 / MPTevol
  ☆10Updated 2 years ago
• XSLiuLab / tumor-immunogenicity-score
  TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020
  ☆33Updated 4 years ago
• jgamache014 / snRNA-seq-workflow
  Human brain, >200,000 nuclei
  ☆23Updated 4 years ago
• waldronlab / SingleCellMultiModal
  Single Cell multimodal data scripts for downloading datasets
  ☆17Updated last month
• nuno-agostinho / psichomics
  Interactive R package to quantify, analyse and visualise alternative splicing
  ☆37Updated last week
• waldronlab / PublicDataResources
  Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…
  ☆15Updated 8 months ago
• crazyhottommy / scCustomize
  Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.
  ☆16Updated 4 years ago
• waldronlab / TCGAutils
  Toolbox package for organizing and working with TCGA data
  ☆28Updated last month
• cBioPortal / cgdsr
  R-Based API for accessing the MSKCC Cancer Genomics Data Server (CGDS)
  ☆25Updated 5 years ago
• CompEpigen / methrix
  An R for fast and flexible DNA methylation analysis
  ☆35Updated last month
• Core-Bioinformatics / bulkAnalyseR
  ☆29Updated 2 years ago
• ConesaLab / MultiPower
  Statistical power studies for multi-omics experiments.
  ☆32Updated 11 months ago
• AlexandrovLab / SigProfilerMatrixGeneratorR
  R wrapper for utilizing the SigProfilerMatrixGenerator framework
  ☆20Updated 3 years ago
• stephaniehicks / methylCC
  R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms
  ☆18Updated last month
• goncalves-lab / waddR
  R package for detecting differential distributions using a statistical test based on the wasserstein distance
  ☆27Updated 2 months ago
• waldronlab / HGNChelper
  Identify and correct invalid gene symbols
  ☆61Updated last year
• Shians / CellBench
  R package for benchmarking single cell analysis methods
  ☆32Updated 2 years ago