uc-bd2k / GREP2Links
GEO RNA-seq Experiments Processing Pipeline
☆21Updated 5 years ago
Alternatives and similar repositories for GREP2
Users that are interested in GREP2 are comparing it to the libraries listed below
Sorting:
- Multi-omic Integration and Analysis of cBioPortal and TCGA data with MultiAssayExperiment☆21Updated last month
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆32Updated 3 years ago
- Explore the cancer relevance of your gene list☆51Updated 5 months ago
- Gene-level general linear mixed model☆22Updated 7 months ago
- ☆25Updated 2 months ago
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- Course Materials for Genomics Data Mining☆22Updated this week
- Human brain, >200,000 nuclei☆24Updated 4 years ago
- Molecular Signatures Database (MSigDB) in a data frame☆16Updated 6 years ago
- ☆28Updated last year
- The official repository of the Bioconductor 2019 Conference Workshops☆25Updated 2 years ago
- ☆16Updated 2 years ago
- R vignettes for processing BUS format single-cell RNA-seq files☆20Updated 5 years ago
- Python function for TMB snake plots☆16Updated 5 years ago
- Cancer Dependency Map package☆30Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated 2 weeks ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 6 years ago
- Repository for supplemental material of manuscripts☆18Updated 4 years ago
- Code for EpiMap data browser☆14Updated last year
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆29Updated 2 years ago
- ☆10Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Trans-association between HLA and TCR-CDR3☆18Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆16Updated 8 months ago
- GEfetch2R - Access Single-cell/Bulk RNA-seq Data from Public Repositories and Benchmark the Subsequent Format Conversion Tools☆36Updated 4 months ago
- workshop website on readthedocs☆19Updated this week
- ☆17Updated last year
- R package for benchmarking single cell analysis methods☆32Updated last year
- Identify and correct invalid gene symbols☆59Updated 9 months ago