Alternatives and similar repositories for splicejam

Users that are interested in splicejam are comparing it to the libraries listed below

• bartongroup / RATS
  Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.
  ☆34Updated 3 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆42Updated 3 years ago
• kgori / sigfit
  Flexible Bayesian inference of mutational signatures
  ☆36Updated 2 years ago
• kauralasoo / wiggleplotr
  A small R package to make sequencing read coverage plots in R.
  ☆39Updated 2 weeks ago
• luciorq / isoformic
  Isoform-level functional RNA-Seq analysis 🧬
  ☆34Updated 2 weeks ago
• morrislab / pairtree
  Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…
  ☆40Updated last year
• umccr / umccrise
  DRAGEN Tumor/Normal workflow post-processing
  ☆23Updated 2 years ago
• Dowell-Lab / DAStk
  Differential ATAC-seq toolkit
  ☆27Updated last year
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆35Updated 4 years ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year
• nghiavtr / FuSeq
  ☆33Updated 3 years ago
• mritchielab / GlimmaV2
  interactive plots for differential expression analysis
  ☆34Updated 4 months ago
• Xinglab / rMATS-long
  ☆33Updated 10 months ago
• BIMSBbioinfo / pigx_rnaseq
  Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline
  ☆20Updated 10 months ago
• smshuai / DriverPower
  DriverPower
  ☆26Updated 9 months ago
• mhalushka / miRge
  miRge - microRNA alignment software for small RNA-seq data, now at v2.0
  ☆27Updated 3 years ago
• caravagnalab / CNAqc
  Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation
  ☆22Updated last month
• carjed / helmsman
  highly-efficient & lightweight mutation signature matrix aggregation
  ☆19Updated 3 years ago
• simonvh / fluff
  Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…
  ☆71Updated last year
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• griffithlab / VAtools
  A set of tools to annotate VCF files with expression and readcount data
  ☆29Updated 7 months ago
• imbforge / NGSpipe2go
  a set of NGS pipelines
  ☆24Updated last week
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆29Updated 9 months ago
• YaoLab-Bioinfo / intansv
  Integrative analysis of structural variations.
  ☆40Updated last year
• seandavi / SRAdbV2
  R Interface to the NCBI SRA metadata
  ☆23Updated 6 years ago
• mahmoudibrahim / JAMM
  JAMM Peak Finder for Sequencing Datasets
  ☆29Updated 5 years ago
• viq854 / lichee
  Multi-sample cancer phylogeny reconstruction
  ☆35Updated 8 years ago
• stianlagstad / chimeraviz
  chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
  ☆38Updated last year
• sartorlab / methylSig
  R package for DNA methylation analysis
  ☆19Updated last year
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated last week