jmw86069 / splicejam
Sashimi plots for RNA-seq data using detected transcripts
☆28Updated 3 weeks ago
Alternatives and similar repositories for splicejam:
Users that are interested in splicejam are comparing it to the libraries listed below
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Genomic Association Tester☆31Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 6 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- A tidy interface for coverage analysis☆24Updated 5 years ago
- a set of NGS pipelines☆24Updated last week
- Personal diploid genome creation and coordinate conversion☆24Updated 2 weeks ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 8 months ago
- fast webservices based query tool for large sets of genomic features☆25Updated 2 weeks ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated last month
- Chromatin segmentation in R☆19Updated 7 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- R package for Methylation-based Inference of Regulatory Activity☆12Updated 5 years ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated 6 months ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 8 years ago
- Provides Quality Control of sequencing samples by deducing if there is batch effect and adjusts for it.☆35Updated last year
- Allele-Specific Expression by Single-Cell RNA Sequencing☆28Updated 4 years ago
- interactive plots for differential expression analysis☆32Updated 3 weeks ago
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 7 years ago
- R package for reading in & working with NucleoATAC outputs☆26Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- AnaLysis routines for ePigenomicS data - 🏫 Bioconductor project☆16Updated last year
- R package wrapping bedtools☆39Updated 3 weeks ago