Sashimi plots for RNA-seq data using detected transcripts
☆35Sep 4, 2026Updated last month
Alternatives and similar repositories for splicejam
Users that are interested in splicejam are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- General Use Scripts and Helper functions☆16Mar 29, 2018Updated 8 years ago
- Annotation-independent molecular-evidence archives for single-cell RNA-seq☆19Oct 8, 2026Updated 3 weeks ago
- ☆21Apr 20, 2026Updated 6 months ago
- Inference of differential exon usage in RNA-Seq☆10Oct 26, 2026Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A privacy-preserving, browser-based clinical RNA-seq visualization framework linking genomic variants to patient-specific splice evidence…☆18Updated this week
- Short course using RStudio for biological data analysis☆14Jul 7, 2022Updated 4 years ago
- Isoform-level functional RNA-Seq analysis 🧬☆41Jul 7, 2026Updated 3 months ago
- ☆11Sep 1, 2026Updated 2 months ago
- Pipeline for using IDR to produce a set of peaks given two replicate eCLIP peaks☆11Feb 16, 2022Updated 4 years ago
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆33Jun 3, 2022Updated 4 years ago
- Venn diagrams with directionality (concordance), optional display of items inside the figure, text Venn diagrams☆12May 7, 2026Updated 5 months ago
- Command-line tool for the visualization of splicing events across multiple samples☆143Jun 28, 2024Updated 2 years ago
- Write PubMed search results with two display options (citation or listview) to PDF or Word☆13Oct 18, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Exon-exon splice junctions across SRA☆43Jul 30, 2021Updated 5 years ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆17Apr 4, 2024Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ☆21May 31, 2024Updated 2 years ago
- a lexicographically-based GTF/GFF sorter☆39Aug 8, 2026Updated 2 months ago
- This is a repository to help make plots similar to Figure 2 in https://www.biorxiv.org/content/10.1101/388165v3☆14Mar 14, 2019Updated 7 years ago
- A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient☆20Oct 15, 2026Updated 2 weeks ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆97Oct 3, 2026Updated last month
- CLIP Tool Kit (CTK)☆22Apr 28, 2024Updated 2 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆13Sep 25, 2017Updated 9 years ago
- ☆25Feb 6, 2025Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- A universal toolkit for upstream processing of long RNA reads☆245Oct 27, 2026Updated last week
- A simulator of controlled transcript novelty for lrRNA-seq benchmark☆10Sep 25, 2025Updated last year
- ☆12Feb 19, 2021Updated 5 years ago
- Code associated with the manuscript "A complete reference genome improves analysis of human genetic variation".☆17Jan 17, 2023Updated 3 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 5 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The JunctionSeq R package is a powerful tool for testing and visualizing differential usage of exons and splice junctions in next-generat…☆30May 19, 2017Updated 9 years ago
- DTU analysis tool inspired by llamas☆12Aug 19, 2026Updated 2 months ago
- A tool for Read Multi-Mapper Resolution☆25Feb 15, 2017Updated 9 years ago
- Visualizing transcript structure and annotation using ggplot2☆171Aug 24, 2024Updated 2 years ago
- some useful scripts for working with genomics and sequencing data☆18Oct 31, 2019Updated 7 years ago
- A graduate-level elective course: Python Programming for Life Science Students☆10Mar 26, 2026Updated 7 months ago
- A Python library to visualize and analyze long-read transcriptomes☆69Jan 19, 2026Updated 9 months ago