jmw86069 / splicejam
Sashimi plots for RNA-seq data using detected transcripts
☆27Updated last week
Related projects ⓘ
Alternatives and complementary repositories for splicejam
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆32Updated 2 years ago
- A small R package to make sequencing read coverage plots in R.☆37Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆33Updated last year
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 2 years ago
- Genomic Association Tester☆29Updated last year
- ☆23Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆41Updated 2 years ago
- Filter and prioritize fusion calls☆20Updated last month
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Differential ATAC-seq toolkit☆27Updated 10 months ago
- Differential expression and allelic analysis, nonparametric statistics☆27Updated last year
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆22Updated 5 years ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 8 months ago
- DRAGEN Tumor/Normal workflow post-processing☆22Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆29Updated last year
- Interactive R package to quantify, analyse and visualise alternative splicing☆35Updated this week
- R package wrapping bedtools☆37Updated 2 months ago
- ☆21Updated this week
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- ☆32Updated 2 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- Merge fastq files split over lanes☆19Updated 6 years ago
- DriverPower☆26Updated 4 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount data☆25Updated 2 months ago
- Bulk RNA-seq Data Processing, Quality Control, and Downstream Analysis Pipeline☆21Updated last month
- Scripts and software supplement for "Gene-level differential analysis at transcript-level resolution" by Yi, Pimentel, Bray and Pachter☆19Updated 6 years ago
- Genomic data interpretation and visualization Workshop☆18Updated last year
- ☆9Updated 4 years ago