jmw86069 / splicejamLinks
Sashimi plots for RNA-seq data using detected transcripts
☆28Updated 3 months ago
Alternatives and similar repositories for splicejam
Users that are interested in splicejam are comparing it to the libraries listed below
Sorting:
- Relative Abundance of Transcripts: An R package for the detection of Differential Transcript isoform Usage.☆34Updated 3 years ago
- A small R package to make sequencing read coverage plots in R.☆38Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- ☆22Updated 6 months ago
- Genomic Association Tester☆31Updated 2 years ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 6 years ago
- Code for differential splicing comparison paper (Soneson, Matthes, et al.)☆20Updated 9 years ago
- a peak-calling and differential analysis tool for replicated ChIP-Seq data☆37Updated 3 years ago
- Differential ATAC-seq toolkit☆27Updated last year
- RNA-seq workflow: differential transcript usage☆21Updated last year
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Personal diploid genome creation and coordinate conversion☆29Updated 2 months ago
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- ☆28Updated 6 months ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 3 months ago
- Chromatin segmentation in R☆19Updated 7 years ago
- Useful tools for working with Salmon output☆38Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago
- DriverPower☆26Updated 5 months ago
- R package for DNA methylation analysis☆18Updated 10 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- ☆13Updated 7 years ago
- a set of NGS pipelines☆24Updated this week
- Tool for RNA-Seq analysis.☆39Updated 3 years ago
- Interactive R package to quantify, analyse and visualise alternative splicing☆37Updated this week
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆26Updated last year
- Merge fastq files split over lanes☆20Updated 7 years ago
- Splice junction analysis and filtering from BAM files☆40Updated 3 years ago
- ☆23Updated 4 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago