Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
☆16Jan 16, 2024Updated 2 years ago
Alternatives and similar repositories for ONT-sc-splice
Users that are interested in ONT-sc-splice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Benchmarking long-read RNA-seq analysis tools☆28Feb 17, 2025Updated last year
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated last year
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 5 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆60May 15, 2025Updated last year
- The Isoforms from Single-Cell; Long-read Expression Suite☆42Jan 14, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- R package to analyze single cell DNA sequencing data.☆11Updated this week
- ☆10May 31, 2022Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 3 years ago
- End-to-end analysis of Oxford Nanopore single-cell sequencing, from barcode and UMI identification to gene and transcript expression☆120Jan 23, 2026Updated 8 months ago
- ☆24Jul 30, 2025Updated last year
- Transcript discovery and quantification for long read single cell and spatial transcriptomics data using Bambu☆26Updated this week
- Package to wrangle and visualize genomic data in R☆26Feb 10, 2026Updated 8 months ago
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆25Oct 8, 2026Updated last week
- ☆10Jul 6, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆17Jan 13, 2025Updated last year
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 4 years ago
- ☆14Feb 17, 2022Updated 4 years ago
- High-level analysis package for (bio-)informatics☆11Feb 27, 2024Updated 2 years ago
- ☆54Aug 1, 2024Updated 2 years ago
- A pipeline for Nanopore single cell isoform quantification in R☆14Updated this week
- Isoform-level functional RNA-Seq analysis 🧬☆41Jul 7, 2026Updated 3 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq at locus- or subfamily-level☆26Aug 25, 2026Updated last month
- Fast Tandem Repeat Finder☆19Aug 9, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Single-cell analytic toolbox that offers modular workflows for multi-level cellular annotation and user-friendly analysis reports☆11Mar 31, 2026Updated 6 months ago
- Dynamics analysis of Alternative PolyAdenylation from long-reads RNA-seq☆10Sep 6, 2024Updated 2 years ago
- ☆13Mar 5, 2024Updated 2 years ago
- ☆24Jun 7, 2024Updated 2 years ago
- ☆41Aug 4, 2021Updated 5 years ago
- ☆12Oct 5, 2026Updated last week
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆17Sep 7, 2026Updated last month
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆69Updated this week
- deploy a snakemake pipeline directly from version control (under development)☆28Sep 28, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Molecular atlas of the human brain vasculature accross development, adulthood and disease at the single-cell level☆15Jul 10, 2024Updated 2 years ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆37Nov 6, 2025Updated 11 months ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- ☆14Jul 18, 2025Updated last year
- SingleCell Nanopore sequencing data analysis☆72May 30, 2025Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15May 17, 2022Updated 4 years ago
- single RNA-seq analysis of human keloid samples☆14May 25, 2021Updated 5 years ago