landau-lab / ONT-sc-spliceLinks
Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
☆14Updated last year
Alternatives and similar repositories for ONT-sc-splice
Users that are interested in ONT-sc-splice are comparing it to the libraries listed below
Sorting:
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆15Updated 3 years ago
- ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data☆16Updated last year
- Shape Changes In Selecting Sample Outliers in RNA-seq☆11Updated 2 years ago
- Analysis pipeline for our circSC manuscript☆13Updated 3 years ago
- ☆17Updated last year
- ☆20Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆17Updated 2 months ago
- ☆23Updated 2 years ago
- Analyzing chromatin accessibility data in R☆18Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- interactive visualization of single-cell transcriptomes☆11Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆22Updated 6 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated last year
- ☆12Updated 4 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆33Updated 3 years ago
- Scripts used for the ACT paper☆12Updated 4 years ago
- Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas☆25Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated last week
- Tool to parse fasterq/fastq dump outputs for SRA scRNAseq data☆17Updated last year
- Mitochondrial Alteration Enrichment and Genome Analysis Toolkit☆19Updated last year
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆11Updated 3 weeks ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Code and data from Koche et al. Extrachromosomal circular DNA drives oncogenic genome remodeling in neuroblastoma (2020)☆15Updated 4 years ago
- ☆17Updated 2 years ago
- An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization☆18Updated last year
- ☆22Updated 11 months ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year