Tools for detecting alternative splicing events and genotype in single-cell gene expression data.
☆15Jan 16, 2024Updated 2 years ago
Alternatives and similar repositories for ONT-sc-splice
Users that are interested in ONT-sc-splice are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 10X single cell Nanopore reads simulation workflow. Complete documentation avialable at: https://GenomiqueENS.github.io/AsaruSim/☆13Jul 27, 2025Updated 8 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Feb 17, 2025Updated last year
- This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary…☆16Jul 16, 2021Updated 4 years ago
- single-nucleus nanopore reads processing pipeline☆16Aug 16, 2023Updated 2 years ago
- ☆22Jul 30, 2025Updated 7 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Isoform-level functional RNA-Seq analysis 🧬☆36Nov 12, 2025Updated 4 months ago
- High-level analysis package for (bio-)informatics☆11Feb 27, 2024Updated 2 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆57May 15, 2025Updated 10 months ago
- R package to analyze single cell DNA sequencing data.☆10Jan 28, 2026Updated 2 months ago
- ☆106Jan 23, 2026Updated 2 months ago
- ☆18Jan 13, 2025Updated last year
- Package to wrangle and visualize genomic data in R☆26Feb 10, 2026Updated last month
- Shape Changes In Selecting Sample Outliers in RNA-seq☆12Jul 3, 2022Updated 3 years ago
- The Isoforms from Single-Cell; Long-read Expression Suite☆38Jan 14, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Single-Cell Omics for Transcriptome CHaracterization (SCOTCH): isoform-level characterization of gene expression through long-read single…☆19Updated this week
- ☆55Aug 1, 2024Updated last year
- ☆11Mar 21, 2026Updated last week
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 8 months ago
- A versatile method for systematic identification of differential RNA splicing across platforms☆16Mar 21, 2026Updated last week
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆22Jan 26, 2026Updated 2 months ago
- ☆39Aug 4, 2021Updated 4 years ago
- ☆23Jun 7, 2024Updated last year
- deploy a snakemake pipeline directly from version control (under development)☆25Mar 12, 2026Updated 2 weeks ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Mar 13, 2026Updated 2 weeks ago
- Nextflow pipeline to extend reference annotation with nanopore reads, classify novel genes (mRNAs vs lncRNAs).☆16Mar 13, 2026Updated 2 weeks ago
- Docker image of JBrowse Genome Browser☆15Apr 12, 2021Updated 4 years ago
- single RNA-seq analysis of human keloid samples☆12May 25, 2021Updated 4 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16May 17, 2022Updated 3 years ago
- omniCLIP is a CLIP-Seq peak caller☆16Nov 14, 2020Updated 5 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆23Feb 28, 2023Updated 3 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆73Mar 16, 2026Updated last week
- ☆10May 31, 2022Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Tools to handle IMC data☆24Mar 31, 2022Updated 3 years ago
- Gencode UTR fix☆16Jan 11, 2023Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Jun 3, 2025Updated 9 months ago
- Quantification of isoform usage and alternative polyadenylation (APA) from single-cell RNA-seq using a Nextflow-based pipeline.☆31Nov 6, 2025Updated 4 months ago
- Workflow for Nanopore Sequencing of 10x single cell libraries☆19Mar 20, 2025Updated last year
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆27Jan 29, 2026Updated 2 months ago
- long read RNA-seq quantification☆108Mar 16, 2026Updated last week