maxpmx / CelloTypeLinks
End-to-end model for cell segmentation and classification
☆21Updated 10 months ago
Alternatives and similar repositories for CelloType
Users that are interested in CelloType are comparing it to the libraries listed below
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 3 months ago
- ☆56Updated 9 months ago
- ☆13Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆43Updated last week
- comseg☆24Updated 9 months ago
- ☆39Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 6 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆91Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆30Updated 3 months ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆26Updated 7 months ago
- Python package for reading imaging mass cytometry (IMC) files☆16Updated last week
- ☆20Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆33Updated 7 months ago
- ☆33Updated 10 months ago
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆65Updated 5 months ago
- ☆17Updated last year
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- QuPath extension to interactively align images☆26Updated 3 months ago
- ☆30Updated last month
- version 1 scripts for CODA☆57Updated last year
- ☆51Updated 4 months ago
- Spatial Single-Cell Analysis Toolkit☆103Updated 4 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- QuPath extension to run StarDist nucleus detection☆47Updated 4 months ago