maxpmx / CelloTypeLinks
End-to-end model for cell segmentation and classification
☆22Updated 11 months ago
Alternatives and similar repositories for CelloType
Users that are interested in CelloType are comparing it to the libraries listed below
Sorting:
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 5 months ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated this week
- ☆59Updated 10 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 8 months ago
- comseg☆24Updated 10 months ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Python package for reading imaging mass cytometry (IMC) files☆18Updated last week
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆16Updated 4 years ago
- ☆40Updated last year
- ☆13Updated last month
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- Morphology-Enhanced Spatial Transcriptome Analysis Integrator☆27Updated 9 months ago
- ☆34Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- ☆36Updated 2 years ago
- QuPath extension to interactively align images☆26Updated 4 months ago
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- ☆20Updated 2 years ago
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆34Updated 8 months ago
- ☆57Updated 2 weeks ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Framework for image and flow cytometry analysis☆32Updated 2 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆62Updated last week
- Algorithmic and Utility Extensions for the Imaris Program☆19Updated this week
- version 1 scripts for CODA☆59Updated last year
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆12Updated 2 years ago
- ☆17Updated 2 years ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆33Updated 5 months ago