maxpmx / CelloTypeLinks
End-to-end model for cell segmentation and classification
☆20Updated 8 months ago
Alternatives and similar repositories for CelloType
Users that are interested in CelloType are comparing it to the libraries listed below
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆12Updated 2 months ago
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 4 years ago
- ☆13Updated last month
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated this week
- ☆39Updated last year
- ☆54Updated 7 months ago
- Files associated with the From Samples To Knowledge 2025 QuPath training course☆13Updated 5 months ago
- ☆20Updated 2 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- comseg☆24Updated 8 months ago
- QuPath extension to run StarDist nucleus detection☆46Updated 3 months ago
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆29Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- ☆49Updated 3 months ago
- Pixie pipeline described in Liu et al., Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering☆11Updated 2 years ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 5 months ago
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆62Updated 4 months ago
- Python package for reading imaging mass cytometry (IMC) files☆16Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆21Updated 5 months ago
- ☆17Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated last month
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- Interactive applications of stlearn☆15Updated 2 years ago
- ☆34Updated last year