Alternatives and similar repositories for spatial_aging_clocks

Users that are interested in spatial_aging_clocks are comparing it to the libraries listed below

• Patchouli-M / SequencingCancerFinder
  ☆41Updated 6 months ago
• QuKunLab / SPACEL
  ☆60Updated last year
• yuyang3 / pan-B
  These are scripts for pan-cacner B cells analyses.
  ☆56Updated last year
• QiangShiPKU / CoVarNet
  ☆49Updated 3 months ago
• rohitarorayyc / SpatialTranscriptomics
  Spatial Transcriptomic Analysis of OSCC samples
  ☆27Updated 2 years ago
• 10XGenomics / HumanColonCancer_VisiumHD
  Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…
  ☆103Updated 5 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 9 months ago
• TencentAILabHealthcare / spatialID
  ☆40Updated 3 years ago
• Junjie-Hu / NSCLC-immunotherapy
  ☆28Updated last year
• mexchy1000 / CellDART
  domain adaptation of spatial and single-cell transcriptome
  ☆28Updated last year
• axelalmet / flowsig
  Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.
  ☆79Updated 7 months ago
• azizilab / starfysh
  Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology
  ☆123Updated 6 months ago
• yjgeno / GenKI
  ☆19Updated last year
• bsungwoo / spSeudoMap
  spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data
  ☆13Updated last year
• TangFei965 / pan-NK
  These are scripts for pan-cacner NK cells analyses.
  ☆73Updated 2 years ago
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆26Updated last year
• PansccSpat / SpatialMapESCC
  ☆22Updated last year
• JianYang-Lab / MeDuSA
  MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…
  ☆43Updated 9 months ago
• Banovich-Lab / Spatial_PF
  ☆32Updated last month
• ZJUFanLab / scRank
  A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…
  ☆61Updated last month
• immunogenomics / RA_Atlas_CITEseq
  RA Synovial Single-cell Multimodal Cell Atlas
  ☆19Updated last year
• ChanLab-UTSW / BreastCancer_Integrated
  ☆32Updated 9 months ago
• maximemeylan / Meylan_et_al_2022
  ☆20Updated 3 years ago
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last week
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆57Updated 2 years ago
• strangephone / EENT-ONB
  scRNA-seq analysis of EENT-ONB
  ☆22Updated last year
• tiroshlab / Spatial_Glioma
  Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper
  ☆53Updated 10 months ago
• jyyulab / Spotiphy
  Spot pseudo-Imager on top of histology
  ☆42Updated last month
• xiaoyeye / TFvelo
  ☆45Updated last year
• lfranzen / spatial-lung-fibrosis
  Repository for all R scripts used for the bioinformatic analyses of the mouse and human 10x Genomics Visium spatially resolved transcript…
  ☆29Updated last year