sunericd / spatial_aging_clocksLinks
Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life
☆42Updated 5 months ago
Alternatives and similar repositories for spatial_aging_clocks
Users that are interested in spatial_aging_clocks are comparing it to the libraries listed below
Sorting:
- Spatial Transcriptomic Analysis of OSCC samples☆26Updated 2 years ago
- ☆37Updated 3 months ago
- domain adaptation of spatial and single-cell transcriptome☆27Updated last year
- ☆59Updated last year
- Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…☆26Updated last year
- Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.☆77Updated 4 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- These are scripts for pan-cacner B cells analyses.☆54Updated last year
- StereoMM is a graph fusion model that can integrate gene expression, histological images, and spatial location. And the information inter…☆37Updated 3 months ago
- ☆25Updated last year
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆44Updated 7 months ago
- ☆31Updated 2 months ago
- ☆45Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆55Updated 2 years ago
- Spatial Transcriptomic Analysis using Reference-Free auxiliarY deep generative modeling and Shared Histology☆119Updated 3 months ago
- Associated code to the manuscript "Characterization of immune cell populations in the tumor microenvironment of colorectal cancer using h…☆95Updated 3 months ago
- Spatial Cellular Estimator for Tumors☆57Updated 3 weeks ago
- ☆39Updated 2 years ago
- Detect hierarchical structures in cell-cell communications☆15Updated 7 months ago
- ☆40Updated 2 years ago
- Senescent Cell Identification☆43Updated last year
- ☆17Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- R implementation of GeneTrajectory☆65Updated last year
- RA Synovial Single-cell Multimodal Cell Atlas☆17Updated last year
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆38Updated 4 years ago
- A computational method to rank and infer drug-responsive cell population towards in-silico drug perturbation using a target-perturbed gen…☆53Updated 3 months ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆126Updated last year
- The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains☆32Updated 5 months ago
- SpatialGlue is a novel deep learning methods for spatial multi-omics data integration.☆69Updated last year