Repository containing notebooks and scripts associated with spatiotemporal profiling and modeling of brain across adult life
☆50Apr 9, 2025Updated last year
Alternatives and similar repositories for spatial_aging_clocks
Users that are interested in spatial_aging_clocks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆26Apr 9, 2025Updated last year
- Reproducibility repository for the Human Neural Organoid Atlas publication☆44Dec 16, 2024Updated last year
- ☆18Jul 15, 2025Updated 8 months ago
- R package expanding integrative analysis capabilities of Seurat by providing seamless access to popular integration methods and to an int…☆33Sep 3, 2025Updated 7 months ago
- Code and data sharing of Liu et al. 2023 manuscript☆17Apr 18, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Calculate NEPC risk score from bulk transcriptome data or single-cell RNA-seq for prostate cancer☆16Nov 30, 2024Updated last year
- ☆15Dec 19, 2022Updated 3 years ago
- R tools for analysis and visualization of single-cell subclustering data☆18Sep 9, 2025Updated 7 months ago
- End-to-end model for cell segmentation and classification☆22Jan 13, 2025Updated last year
- ☆17Nov 5, 2024Updated last year
- analysis scripts related to Jin et al manuscript on scRNA seq in aging mouse brain☆23Jun 14, 2024Updated last year
- ☆19Dec 15, 2023Updated 2 years ago
- ☆19Mar 8, 2023Updated 3 years ago
- R code used to analyze single cell PDAC data☆43Jun 29, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Custom codes accompanying single cell spatial transcriptomic study on the healthy human lung☆13Dec 27, 2023Updated 2 years ago
- Toolbox of the Human Neural Organoid Cell Atlas☆30Mar 30, 2026Updated last week
- ☆15Dec 11, 2022Updated 3 years ago
- analyses of scRNAseq and spatial transcriptomics dataset of developing human pancreas at multiple gestational stages☆10Jan 30, 2023Updated 3 years ago
- Code to go along with https://doi.org/10.1016/j.cell.2022.09.010☆21Mar 16, 2022Updated 4 years ago
- ☆14Apr 11, 2024Updated last year
- Repo with analysis code for the vascular atlas paper☆10Nov 22, 2024Updated last year
- scAB detects multiresolution cell states with clinical significance☆22Nov 14, 2022Updated 3 years ago
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆10Oct 30, 2023Updated 2 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- 🍹This repo includes the scripts and analysis notebook for the Droplet Hi-C manuscript☆15Feb 6, 2026Updated 2 months ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆11Jun 17, 2024Updated last year
- Code for EpiMap data browser☆14Jun 4, 2024Updated last year
- Scripts for processing sci-RNA-seq/sci-ATAC-seq/sci-CAR reads processing☆15Dec 12, 2018Updated 7 years ago
- Python bindings for hictk: read and write .cool and .hic files directly from Python☆16Mar 30, 2026Updated last week
- Bead-based single-cell atac processing☆33Nov 13, 2021Updated 4 years ago
- Gene group activity utility functions for Scanpy☆101Dec 21, 2024Updated last year
- Cross-platform data for sequencing-based spatial transcriptomics benchmarking☆13Oct 26, 2023Updated 2 years ago
- Repository to store code used for the analyses presented in "Defining the Regulatory Logic of Breast Cancer Using Single-Cell Epigenetic …☆22May 17, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆11Nov 12, 2025Updated 4 months ago
- A record of the analysis pipelines used to create the HTAPP data☆34Apr 15, 2025Updated 11 months ago
- ☆19Mar 31, 2024Updated 2 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆12Feb 7, 2025Updated last year
- ☆13Mar 29, 2024Updated 2 years ago
- Containerized cancer subtype prediction tools for gene expression, miRNA, DNA methylation, somatic mutations and copy number variation.☆36Apr 9, 2025Updated last year