SydneyBioX / BIDCellLinks
Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
☆46Updated last year
Alternatives and similar repositories for BIDCell
Users that are interested in BIDCell are comparing it to the libraries listed below
Sorting:
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- comseg☆24Updated 11 months ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆39Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆94Updated 2 years ago
- Integrated pipeline for multiplexed image analysis☆101Updated last week
- Single-cell spatial proteomics analysis that makes you happy!☆51Updated this week
- Spatial Single-Cell Analysis Toolkit☆107Updated last week
- A toolkit for processing multiplexed tissue images☆67Updated last month
- ☆15Updated 2 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆73Updated 2 years ago
- ☆40Updated last week
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆86Updated 2 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 7 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆35Updated last year
- ☆59Updated 11 months ago
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- Accessible and interoperable whole slide image analysis☆173Updated last week
- ☆158Updated last year
- ☆36Updated 2 years ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆112Updated this week
- CellLENS: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆34Updated 5 months ago
- ☆42Updated 2 months ago
- ☆58Updated last month
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆256Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated last month
- ☆53Updated 4 years ago
- ☆52Updated 3 months ago