SydneyBioX / BIDCell
Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
☆35Updated 4 months ago
Related projects ⓘ
Alternatives and complementary repositories for BIDCell
- Sub-cellular spatial transcriptomics Cell Segmentation☆56Updated last year
- ☆14Updated 2 years ago
- ☆33Updated 7 months ago
- Spatial Single-Cell Analysis Toolkit☆74Updated this week
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆69Updated 11 months ago
- Integrated pipeline for multiplexed image analysis☆76Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆30Updated 6 months ago
- comseg☆16Updated last week
- Super-resolved spatial transcriptomics by deep data fusion☆67Updated last year
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆92Updated last week
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆46Updated 8 months ago
- ☆25Updated 6 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆70Updated 2 weeks ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆29Updated 10 months ago
- ☆38Updated last week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆41Updated 4 months ago
- ☆95Updated last month
- Join subcellular Visium HD bins into cells☆58Updated last week
- ☆34Updated 2 years ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆141Updated this week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆32Updated 2 years ago
- ☆28Updated last month
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆50Updated 5 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆24Updated 2 months ago
- ☆28Updated this week
- Code used to benchmark Xenium☆40Updated 4 months ago
- ☆38Updated last month
- Spatial direct messaging detected by bivariate Moran☆24Updated last week
- Construction of a 3D whole organism spatial atlas by joint modeling of multiple slices☆56Updated last year
- ☆29Updated 11 months ago