HTGenomeAnalysisUnit / nf-pipeline-regenieView external linksLinks
GWAS and rare variants tests at high speed using regenie
☆16Jan 9, 2026Updated last month
Alternatives and similar repositories for nf-pipeline-regenie
Users that are interested in nf-pipeline-regenie are comparing it to the libraries listed below
Sorting:
- Flexible linear mixed model framework for Genome Wide Association Studies☆18Nov 6, 2025Updated 3 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Secure and federated genome-wide association studies☆17Mar 19, 2025Updated 10 months ago
- ☆17Jul 13, 2024Updated last year
- Repository☆10Oct 23, 2024Updated last year
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 6 years ago
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated 11 months ago
- ☆12Sep 14, 2025Updated 5 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆11Jul 29, 2023Updated 2 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Nov 9, 2024Updated last year
- MorphLink: Bridging Cellular Morphological Behaviors and Molecular Dynamics in Multi-modal Spatial Omics☆16Dec 7, 2025Updated 2 months ago
- ☆18Feb 5, 2025Updated last year
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated last year
- ☆12Dec 4, 2023Updated 2 years ago
- ☆14Oct 17, 2024Updated last year
- Publically accessible code for DIISCO method☆12Oct 15, 2025Updated 4 months ago
- ☆12Sep 29, 2023Updated 2 years ago
- ☆13Sep 30, 2024Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated 9 months ago
- ☆16Oct 23, 2025Updated 3 months ago
- ☆16Sep 1, 2023Updated 2 years ago
- GWAS genetics Fine-mapping method☆17May 17, 2024Updated last year
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆12Mar 7, 2023Updated 2 years ago
- ☆13Jun 21, 2017Updated 8 years ago
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆15Nov 23, 2025Updated 2 months ago
- "Topological Identification and Interpretation for Single-cell Gene Regulation Elucidation across Multiple Platforms using scMGCA" in Nat…☆17Feb 5, 2023Updated 3 years ago
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated 6 months ago
- PRS pipeline using PRS_CS☆15Oct 21, 2025Updated 3 months ago
- Finding a scalable alternative to the VCF File for genomics analysis☆14Jan 5, 2017Updated 9 years ago
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆17Apr 20, 2024Updated last year
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆16Oct 5, 2024Updated last year
- Regenotyping structural variants through an accurate and efficient force-calling method☆25Nov 28, 2025Updated 2 months ago
- Recommended Graphtyper pipelines☆15Feb 22, 2021Updated 4 years ago
- Clonalscope is a subclone detection method based on copy number alterations (CNAs) for single-cell and ST tumor sequencing data. Clonalsc…☆26Sep 30, 2025Updated 4 months ago
- R tool to analyse and integrate multiple -omics data☆15Jan 4, 2026Updated last month
- From QC to summary statistics☆17Jun 27, 2020Updated 5 years ago
- A clustering algorithm that can perform internal validation inspired by forest fire dynamics and self-organized criticality☆18May 18, 2022Updated 3 years ago