GWAS and rare variants tests at high speed using regenie
☆16Oct 14, 2026Updated this week
Alternatives and similar repositories for nf-pipeline-regenie
Users that are interested in nf-pipeline-regenie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flexible linear mixed model framework for Genome Wide Association Studies☆19Jun 9, 2026Updated 4 months ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated last year
- Repository☆10Oct 23, 2024Updated last year
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆14Mar 16, 2026Updated 7 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆17Jul 13, 2024Updated 2 years ago
- AIDA phase 1 splicing QTL paper☆16Feb 17, 2026Updated 8 months ago
- Secure and federated genome-wide association studies☆19Mar 19, 2025Updated last year
- AirLift is a tool that updates mapped reads from one reference genome to another. Unlike existing tools, It accounts for regions not shar…☆28May 23, 2024Updated 2 years ago
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11Oct 7, 2026Updated last week
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆13Mar 3, 2025Updated last year
- Improving gene isoform quantification with miniQuant☆44Sep 30, 2026Updated 2 weeks ago
- ☆14Oct 17, 2024Updated 2 years ago
- Multi-nucleotide variants (MNVs) in gnomAD 2.1☆14Sep 1, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Regenotyping structural variants through an accurate and efficient force-calling method☆26Apr 17, 2026Updated 6 months ago
- Genotype-Neighborhood Associations: A tool for identifying genetic variant associations to the abundance of cell states in single-cell d…☆18Oct 5, 2024Updated 2 years ago
- ☆13Jul 8, 2026Updated 3 months ago
- Code for paper "Principled feature attribution for unsupervised gene expression analysis"☆14Mar 7, 2023Updated 3 years ago
- A Shiny-based framework to analyze and visualize interactively genomic data☆11May 11, 2023Updated 3 years ago
- An R package for performing MetaSTAAR procedure in whole-genome sequencing studies☆27Nov 9, 2024Updated last year
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 7 years ago
- Enhancer-Gene Prediction Pipeline based on logistic regression and ABC model☆37Sep 25, 2026Updated 3 weeks ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆12Apr 18, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆16Sep 1, 2023Updated 3 years ago
- ☆13Sep 30, 2024Updated 2 years ago
- R tool to analyse and integrate multiple -omics data☆16Sep 10, 2026Updated last month
- Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…☆19Apr 20, 2024Updated 2 years ago
- A Rust-Based suite of utilities for ultra-fast genomic feature extraction☆47Dec 18, 2025Updated 9 months ago
- scNOVA : Single-Cell Nucleosome Occupancy and genetic Variation Analysis☆12Jul 29, 2023Updated 3 years ago
- Easy genomic regions for short-read variant calling☆46Sep 10, 2025Updated last year
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆14Jul 29, 2025Updated last year
- A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscr…☆16Apr 12, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- regenie is a C++ program for whole genome regression modelling of large genome-wide association studies.☆271Oct 2, 2026Updated 2 weeks ago
- ☆13Jun 21, 2017Updated 9 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Publically accessible code for DIISCO method☆13Oct 15, 2025Updated last year
- Human mitochondrial variants annotation using HmtVar.☆18Oct 16, 2023Updated 3 years ago
- From QC to summary statistics☆17Jun 27, 2020Updated 6 years ago
- STT-4230 / STT-6230 R pour scientifique - Notes de cours☆12Dec 16, 2022Updated 3 years ago