HTGenomeAnalysisUnit / nf-pipeline-regenie
GWAS and rare variants tests at high speed using regenie
☆13Updated 3 months ago
Alternatives and similar repositories for nf-pipeline-regenie:
Users that are interested in nf-pipeline-regenie are comparing it to the libraries listed below
- Machine learning use cases for teaching☆13Updated 7 years ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆18Updated 2 months ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated last year
- R interface to genome annotation files and the UCSC genome browser☆31Updated this week
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- Pairwise Hierarchical Model☆17Updated 3 years ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 5 months ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 7 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 2 months ago
- Create LocusZoom-style plots in R.☆21Updated 2 years ago
- Personalized prioritization of driver genes in cancer☆9Updated 3 years ago
- Bedfile perturbation tool☆17Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 3 months ago
- This repository contains the code to run the ASCETS arm-level copy number events caller for targeted sequencing data. ASCETS produces arm…☆15Updated last year
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated last year
- 🐶 hlabud: HLA genotype analysis in R☆16Updated last month
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- R/BioC package to estimate the cell composition of whole blood in DNA methylation samples in microarray or sequencing platforms☆19Updated 2 years ago
- Code to reproduce analysis in "Addressing confounding artifacts in reconstruction of gene co-expression networks"☆16Updated 5 years ago
- Learn tissue-specificity and tissue-sharing of genetic regulation across 49 tissues using constraint matrix factorization model☆21Updated 4 years ago
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 6 years ago
- ☆13Updated last year
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆11Updated this week
- ☆16Updated 2 years ago
- ☆12Updated 3 months ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆20Updated 3 weeks ago
- scRNA-Seq analysis vignettes☆9Updated 3 years ago