HTGenomeAnalysisUnit / nf-pipeline-regenie
GWAS and rare variants tests at high speed using regenie
☆13Updated 2 months ago
Alternatives and similar repositories for nf-pipeline-regenie:
Users that are interested in nf-pipeline-regenie are comparing it to the libraries listed below
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆10Updated last year
- The `multiGSEA` R package was designed to run a robust GSEA-based pathway enrichment for multiple omics layers.☆17Updated last month
- Machine learning use cases for teaching☆13Updated 7 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 6 months ago
- Build single sample pair-based (rule-based) classifiers using top-score pairs or random forest for multi-class problems.☆12Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Code for EpiMap data browser☆14Updated 8 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated 10 months ago
- Interactive eQTL visualizations☆13Updated 2 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆13Updated 3 years ago
- ASCETIC (Agony-baSed Cancer EvoluTion InferenCe) is a novel framework for the inference of a set of statistically significant temporal pa…☆11Updated 3 months ago
- ☆16Updated 2 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆20Updated 3 years ago
- R interface to genome annotation files and the UCSC genome browser☆30Updated this week
- Pairwise Hierarchical Model☆17Updated 2 years ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated last month
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆19Updated 3 months ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 4 months ago
- Trans-association between HLA and TCR-CDR3☆15Updated last year
- Create LocusZoom-style plots in R.☆21Updated last year
- R interface to megadepth: BigWig and BAM related utilities☆12Updated 2 months ago
- Create a cromphensive report of DEG list coming from any analysis of RNAseq data☆24Updated 11 months ago
- Chromatin ACcessibility and Transcriptomics Unifying Software☆16Updated 3 months ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆22Updated last year
- interactive plots for differential expression analysis☆29Updated this week
- ☆26Updated last year
- 🧭 Navigate single-cell RNA-seq datasets in your web browser.☆28Updated last year
- Genetic correlation calculation pipeline via summary statistics for PheWeb☆13Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Bedfile perturbation tool☆17Updated last year