Alternatives and similar repositories for Slide-tags

Users that are interested in Slide-tags are comparing it to the libraries listed below

• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆33Updated last month
• dyxmvp / Spatial_ATAC-seq
  ☆22Updated 2 years ago
• Caochris / SCOTIA
  ☆19Updated last week
• cbib / Seurat-Integrate
  R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
  ☆27Updated last month
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆30Updated 4 months ago
• edroaldo / fusca
  Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …
  ☆19Updated 2 years ago
• Banovich-Lab / Spatial_PF
  ☆28Updated 4 months ago
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆39Updated 3 weeks ago
• lueckenlab / single-cell-papers-trends
  Trends in single cell papers
  ☆15Updated 9 months ago
• ventolab / Human-Uterus-Cell-Altas_UHCA
  UHCA
  ☆11Updated 5 months ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆43Updated 2 years ago
• yunguan-wang / Spacia
  ☆29Updated 2 months ago
• saezlab / MOFAcellulaR
  R package to infer multicellular programs from single-cell data using multi-omics factor analysis (MOFA)
  ☆11Updated last year
• CamaraLab / ConDecon
  R package: ConDecon is a clustering-independent deconvolution method for estimating cell abundances in bulk tissues using single-cell RNA…
  ☆13Updated 8 months ago
• kaishumason / NicheDE
  NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.
  ☆20Updated last month
• qingnanl / gsdensity
  ☆9Updated last year
• Teichlab / sctk
  ☆39Updated 9 months ago
• Teichlab / visium_stitcher
  Stitch multiple Visium slides together
  ☆16Updated last year
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆28Updated 7 months ago
• MarioniLab / hbca
  Code used to process the data of the HBCA project
  ☆29Updated last year
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated 2 months ago
• klarman-cell-observatory / HTAPP-Pipelines
  A record of the analysis pipelines used to create the HTAPP data
  ☆33Updated 3 months ago
• WWXkenmo / ICAnet
  Independent Component Analysis decipher functional modules for better cell clustering and annotation
  ☆16Updated 3 years ago
• alevax / pyviper
  Porting of Protein Activity and Pathway Inference to single cell and Python.
  ☆12Updated 2 months ago
• davemcg / scEiaD
  Snakefile-based process to turn 1.4 million ocular cells into a unified meta-atlas
  ☆26Updated last year
• satijalab / Mixscale
  ☆19Updated 2 months ago
• atakanekiz / CIPR-Package
  Cluster Identity Predictor (R package implementation)
  ☆20Updated 3 years ago
• soumelis-lab / ICELLNET
  ☆20Updated last week
• dpeerlab / progressive-plasticity-crc-metastasis
  Notebooks for generating figures in "Progressive Plasticity During Colorectal Cancer Metastasis"
  ☆16Updated 7 months ago
• KChen-lab / MEDALT
  Inference of Minimal Event Distance Aneuploidy Lineage Tree based on single cell copy number profile
  ☆20Updated last year