Alternatives and similar repositories for GeneSegNet

Users that are interested in GeneSegNet are comparing it to the libraries listed below

• BiomedicalMachineLearning / stlearn_interactive
  Interactive applications of stlearn
  ☆15Updated 2 years ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆37Updated 11 months ago
• broadchenf / Slide-tags
  ☆12Updated 2 years ago
• bwalker1 / NeST
  ☆13Updated 2 years ago
• walsh-quail-labs / IMC-Lung
  ☆21Updated 2 years ago
• ding-lab / mushroom
  A computational tool for identification of 3D multi-modal spatial neighborhoods
  ☆15Updated 6 months ago
• FrancisCrickInstitute / TRACERx-PHLEX
  Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
  ☆14Updated 6 months ago
• 10XGenomics / janesick_nature_comms_2023_companion
  Code companion to the publication "High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spat…
  ☆29Updated 2 years ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆34Updated 9 months ago
• GuangyuWangLab2021 / Thor
  Cell level integrated analysis of tissue histology and spatial transcriptomics
  ☆31Updated 4 months ago
• katherine-benjamin / topact-paper
  Code for the paper `Multiscale topology classifies and quantifies cell types in subcellular spatial transcriptomics"
  ☆13Updated last year
• ding-lab / ST_subclone_publication
  Code for spatial subclone paper
  ☆16Updated last year
• LiHongCSBLab / SOAPy
  ☆33Updated 11 months ago
• joshwillmoore1 / MuSpAn-Public
  A public MuSpAn page for community discussions and issue reporting.
  ☆18Updated 2 weeks ago
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆28Updated 10 months ago
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆22Updated 5 months ago
• dyxmvp / Spatial_ATAC-seq
  ☆23Updated 2 years ago
• wollmanlab / JSTA
  ☆15Updated 3 years ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆46Updated last year
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆70Updated 2 months ago
• YiLab-SC / scHolography
  ☆11Updated last year
• MargoKapustina / XeniumSpatialAnalysis
  R-based Xenium Spatial Analysis Toolkit to assess gene expression gradients
  ☆30Updated 9 months ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 3 months ago
• quentinblampey / spatialdata_xenium_explorer
  Interoperability between SpatialData and the Xenium Explorer
  ☆25Updated last year
• gevaertlab / GBM360
  Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications
  ☆25Updated 2 years ago
• yi-zhang / STHD
  STHD: probabilistic cell typing of Single spots in whole Transcriptome spatial data with High Definition
  ☆35Updated 9 months ago
• chenhcs / SCS
  Sub-cellular spatial transcriptomics Cell Segmentation
  ☆68Updated 2 years ago
• theislab / ncem_tutorials
  ☆13Updated 3 years ago
• Teichlab / thymusatlas
  ☆14Updated 6 years ago
• TrigosTeam / SPIAT
  ☆25Updated last week