BoomStarcuc / GeneSegNet

Related projects ⓘ

Alternatives and complementary repositories for GeneSegNet

• theislab / ncem_tutorials
  ☆12Updated 2 years ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆23Updated 9 months ago
• wanglab-broad / CAST
  CAST package
  ☆25Updated 3 weeks ago
• dyxmvp / Spatial_ATAC-seq
  ☆20Updated last year
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆21Updated 4 years ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆26Updated last week
• FrancisCrickInstitute / TRACERx-PHLEX
  Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging
  ☆12Updated 4 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆31Updated 6 months ago
• wanglab-broad / spin
  SPatial INtegration of spatially resolved transcriptomics datasets
  ☆14Updated 2 months ago
• sunnyzwu / stromal_subclasses
  code for data processing and visualisation associated with the stromal subclasses manuscript
  ☆11Updated 4 years ago
• whhudson / spatialTCR
  ☆12Updated 2 years ago
• dpeerlab / ENVI
  ☆38Updated last month
• caleblareau / maegatk
  Mitochondrial Alteration Enrichment and Genome Analysis Toolkit
  ☆17Updated 10 months ago
• SGDDNB / GeneSwitches
  Ordering gene-expression and functional events in single-cell experiments
  ☆18Updated 8 months ago
• GreenleafLab / brainchromatin
  Code used to analyze single cell RNA and ATAC sequencing in developing human brain
  ☆31Updated 2 years ago
• dchary / ucdeconvolve
  UniCell Deconvolve - Cloud Cell Type Deconvolution For Transcriptomic Data
  ☆20Updated last year
• hsmaan / Iniquitate
  Analysis of imbalanced data and its impacts in a scRNA-seq integration setting
  ☆28Updated this week
• FridleyLab / spatialGE
  Methods for visualization and analysis of spatially-resolved gene expression
  ☆13Updated last week
• Flashiness / METI
  Morphology-Enhanced Spatial Transcriptome Analysis Integrator
  ☆18Updated 2 months ago
• JunyueCaoLab / EasySci
  Computational pipeline to process EasySci-RNA data.
  ☆14Updated 10 months ago
• jfnavarro / st_analysis
  A toolset for analysis and visualisation of Spatial Transcriptomics datasets.
  ☆18Updated 3 years ago
• KramannLab / visium_heart
  Spatial transcriptomics of heart tissue
  ☆17Updated 2 years ago
• shenglinmei / ProstateCancerAnalysis
  ☆15Updated last year
• LiHongCSBLab / SOAPy
  ☆14Updated last month
• stevexniu / spots
  Statistical analysis for spatial omics data
  ☆10Updated 2 years ago
• bwalker1 / NeST
  ☆13Updated last year
• raphael-group / STARCH
  Spatial Transcriptomics Algorithm Reconstructing Copy-number Heterogeneity
  ☆20Updated 4 months ago
• parveendabas / GBMatlas
  ☆17Updated 2 years ago
• wanglab-broad / mCNS-atlas
  ☆17Updated 7 months ago
• raphael-group / paste2
  Probabilistic Alignment of Spatial Transcriptomics Experiments v.2
  ☆29Updated 10 months ago