A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
☆12Feb 7, 2025Updated last year
Alternatives and similar repositories for phip-flow
Users that are interested in phip-flow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆19Nov 7, 2024Updated last year
- Bayesian enrichment estimation in R☆11Nov 15, 2025Updated 6 months ago
- Analysis tools for PhIP-seq experiments☆12Jan 24, 2022Updated 4 years ago
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- ☆11Mar 12, 2026Updated 2 months ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PepSIRF: Peptide-based Serological Immune Response Framework☆11Apr 2, 2026Updated last month
- Fork of the KaKs_Calculator2.0 project https://sourceforge.net/projects/kakscalculator2☆14May 18, 2023Updated 3 years ago
- Single Cell Pretrained Regulatory network INference from Transcripts☆11Sep 17, 2024Updated last year
- Useful functions for manipulating Multiplex Assay of Variant Effect datasets.☆10Feb 6, 2025Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 10 months ago
- ☆17Oct 7, 2024Updated last year
- an efficient data integration method for multiple spatial transcriptomics data with non- cluster-relevant effects such as the complex batc…☆15Dec 15, 2025Updated 5 months ago
- Automatised pipeline of ConsensuSV workflow.☆24Aug 23, 2023Updated 2 years ago
- Proteogenomics database-generation tool for protein haplotypes and variants☆11Jun 19, 2025Updated 11 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Identify cell type based on cell markers for single cell squencing☆12Jul 10, 2024Updated last year
- An awesome tool to visualize snakemake rule graphs☆36May 2, 2026Updated 3 weeks ago
- Reproducible workflow for SARS-CoV-2 recombinant sequence detection.☆18May 15, 2023Updated 3 years ago
- ☆50Sep 4, 2025Updated 8 months ago
- Design data and process for the AdaptyvBio protein design competition☆11Dec 11, 2024Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆27Oct 31, 2023Updated 2 years ago
- Racmacs R package for performing antigenic cartography☆24Jun 27, 2024Updated last year
- Implementation of the MSqRob analysis of differentially expressed proteins using the Features infrastructure☆13Apr 24, 2026Updated last month
- PiGx SARS-CoV-2 wastewater sequencing pipeline☆18May 3, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆21Jul 16, 2024Updated last year
- ORF prediction using python☆10Aug 24, 2021Updated 4 years ago
- The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…☆11Sep 22, 2020Updated 5 years ago
- Scripts to reproduce analyses of tradeSeq paper.☆16Feb 5, 2020Updated 6 years ago
- ☆12Apr 16, 2026Updated last month
- ☆29Jan 4, 2024Updated 2 years ago
- Analysis for 2019 submission "Integrated single cell analysis of blood and cerebrospinal fluid leukocytes in multiple sclerosis" Schaffli…☆22Jun 17, 2021Updated 4 years ago
- MSBooster allows users to add deep learning-based features to .pin files before Percolator PSM rescoring☆21May 17, 2026Updated last week
- End-to-end model for cell segmentation and classification☆23Jan 13, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Trends in single cell papers☆17Sep 23, 2024Updated last year
- blastn2dotplots: multiple dot-plot visualizer☆24Sep 15, 2025Updated 8 months ago
- Spatial transcriptomics analyses and decoding in R☆24Oct 23, 2025Updated 7 months ago
- This repository is for the paper "A generative nonparametric Bayesian model for whole genomes"☆15Jun 7, 2023Updated 2 years ago
- Align sequences and then parse features.☆17Oct 24, 2025Updated 7 months ago
- Automatic selection of number of principal components☆17Jun 27, 2022Updated 3 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆20Oct 10, 2024Updated last year