matsengrp / phip-flowLinks
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
☆12Updated 3 months ago
Alternatives and similar repositories for phip-flow
Users that are interested in phip-flow are comparing it to the libraries listed below
Sorting:
- Bayesian enrichment estimation in R☆11Updated 2 years ago
- ☆18Updated 6 months ago
- Analysis tools for PhIP-seq experiments☆12Updated 3 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- R tool to analyse and integrate multiple -omics data☆12Updated this week
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆28Updated 3 weeks ago
- The RepeatScout 1.0.5, written by Pevzner et al., source code for browsing. The official release and more information are available at h…☆15Updated 2 years ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- ☆19Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 4 months ago
- curPrimers is a tool for trimming primer sequences from amplicon based NGS reads☆16Updated last week
- EARRINGS: An efficient and ingenious adapter removal design for large-scale NGS meta-analyses☆9Updated 3 weeks ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆10Updated 7 years ago
- SNp Exploration and Analysis using EPigenomics data☆10Updated 4 months ago
- k-mer similarity analysis pipeline☆21Updated last month
- Comprehensive and scalable differential splicing analyses☆17Updated 2 months ago
- ☆16Updated last year
- Whole genome workflows☆12Updated 6 months ago
- Ultra-fast 5' and 3' demultiplexer☆27Updated last year
- A script to make downloading of SRA/GEO data easier☆30Updated last year
- Tool package to perform in-silico CRISPR analysis and assessment☆27Updated last year
- ☆9Updated 3 years ago
- An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data☆13Updated 11 months ago
- Computational framework to identify promoter sequences from RNA-seq datasets☆10Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆17Updated 3 months ago
- Freddie: Annotation-independent detection and discovery of transcriptomic alternative splicing isoforms using long-read sequencing☆16Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆32Updated last year
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆17Updated last year
- ☆15Updated 2 years ago
- Debarcer: A package for De-Barcoding and Error Correction of sequencing data containing molecular barcodes☆15Updated 4 years ago