matsengrp / phip-flowLinks
A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
☆12Updated 10 months ago
Alternatives and similar repositories for phip-flow
Users that are interested in phip-flow are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- Bayesian enrichment estimation in R☆11Updated last month
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Updated 9 months ago
- rnalib: a python-based transcriptomics library☆11Updated last month
- ☆20Updated 7 months ago
- read, parse and operate different multiple input file formats with OpenVariant☆14Updated last month
- Rapid and accurate ancestry inference using SNVs.☆28Updated 4 months ago
- ExTraMapper is a tool to find Exon and Transcript-level Mappings of a given pair of orthologous genes between two organisms using sequenc…☆11Updated 3 years ago
- Analyse RNA feature distributions.☆18Updated last year
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated last year
- A Quality Control filter and parser for NCBI BLAST XML results.☆17Updated 5 years ago
- ☆17Updated 5 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆13Updated 8 years ago
- Two pass alignment for long reads☆22Updated 4 years ago
- ☆17Updated 4 months ago
- Efficient retrieval, download, and unification of genomic data from leading biodiversity databases☆17Updated last week
- SpliceWiz is an R package for exploring differential alternative splicing events in splice-aware alignment BAM files.☆21Updated 2 weeks ago
- k-mer similarity analysis pipeline☆23Updated last month
- Long read to rMATS☆32Updated 2 years ago
- isoCirc☆10Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- FunctionaL Omics Processing platform☆13Updated last year
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- ☆10Updated 9 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated last week
- A script to make downloading of SRA/GEO data easier☆31Updated 2 years ago
- nanoNOMe (Nucleosome Occupancy and Methylome nanopore sequencing) Analysis☆20Updated 3 years ago
- ☆23Updated 4 years ago