☆20Sep 24, 2026Updated last month
Alternatives and similar repositories for spatialdata-sandbox
Users that are interested in spatialdata-sandbox are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code repository for the GBM-CARE consortium IDH-WT part☆13Mar 9, 2025Updated last year
- ☆15Feb 5, 2025Updated last year
- Count ratio uncertainty modeling base linear regression☆16Sep 23, 2026Updated last month
- ☆67Sep 9, 2026Updated last month
- An application to display spatial and single-cell experiment data. Built in React, on the Vitessce framework.☆15Nov 3, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 4 years ago
- A 3D interactivity toolbox for napari☆38Jul 8, 2025Updated last year
- ☆14Jun 28, 2026Updated 4 months ago
- An open and interoperable data framework for spatial omics data☆404Updated this week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Oct 8, 2025Updated last year
- A toolkit to test, validate, and improve agentic skills.☆18Updated this week
- ☆20May 1, 2025Updated last year
- napari widgets for start-to-finish batch processing☆15Jun 1, 2026Updated 4 months ago
- SpatialCorr: Identify gene sets with spatially varying correlation☆18Jan 2, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Evaluating the quality of a cell segmentation method without reference.☆13Jul 26, 2025Updated last year
- Process and analyze surfaces using vedo in napari.☆26May 13, 2024Updated 2 years ago
- Lazily load multiscale whole-slide images with openslide and dask☆34Dec 6, 2022Updated 3 years ago
- Running ImJoy plugins in Jupyter notebooks☆11Jan 10, 2023Updated 3 years ago
- ☆108Updated this week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆113Updated this week
- Various parts made for fluorescence microscopy + optics work☆19Jul 22, 2019Updated 7 years ago
- Python API and Jupyter widget for Vitessce☆67Sep 22, 2026Updated last month
- ☆16Jan 22, 2026Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Minimum Information about Tissue Imaging☆21Oct 18, 2023Updated 3 years ago
- Bio-Formats image file format to raw format converter☆115Oct 22, 2026Updated last week
- ☆15Jun 27, 2025Updated last year
- A nextflow based tool that wraps bfconvert and bioformats2raw to convert image data collections to OME-TIFF and OME-Zarr, respectively, i…☆31Mar 14, 2025Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆71Apr 24, 2026Updated 6 months ago
- Jupyter notebooks for CellProfiler and friends☆14Mar 23, 2018Updated 8 years ago
- ☆17Sep 27, 2026Updated last month
- Single-cell spatial omics analysis that makes you happy!☆79Updated this week
- Use dimensionality reduction to create thumnails for high-dimensional imaging☆12May 21, 2026Updated 5 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆23Mar 26, 2021Updated 5 years ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆80Sep 20, 2026Updated last month
- This is a repository for the Automated Microscopy Control Environment.☆10Jan 6, 2022Updated 4 years ago
- Napari plugin for vollseg☆14Jul 16, 2025Updated last year
- Package for the analysis of Transcripts outside segmented cells in ST data☆32Updated this week
- Deep learning based spot detection for FISH images.☆35Jan 7, 2026Updated 9 months ago
- Sample representation benchmark for single-cell data☆15Jun 12, 2026Updated 4 months ago