giovp / spatialdata-sandboxLinks
☆13Updated last week
Alternatives and similar repositories for spatialdata-sandbox
Users that are interested in spatialdata-sandbox are comparing it to the libraries listed below
Sorting:
- Minimum Information about Tissue Imaging☆21Updated 2 years ago
- ☆75Updated this week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 5 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last month
- Single-cell spatial proteomics analysis that makes you happy!☆43Updated last week
- ☆30Updated last year
- ☆18Updated 5 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- Interoperability between SpatialData and the Xenium Explorer☆25Updated last year
- Segmentation error aware clustering for multiplexed imaging☆19Updated 10 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆34Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆33Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆100Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆57Updated 4 months ago
- A plugin to visualise 3D spatial single cell omics☆21Updated 3 weeks ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated 2 weeks ago
- Interactive visualization of spatial omics data☆71Updated this week
- ☆27Updated last year
- Python API and Jupyter widget for Vitessce☆57Updated this week
- Slides and Notebooks for scverse 2024☆17Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆25Updated last week
- ☆62Updated last week
- Integrated pipeline for multiplexed image analysis☆99Updated 7 months ago
- Spatial Single-Cell Analysis Toolkit☆103Updated 4 months ago
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 5 months ago
- Static plotting for spatialdata☆68Updated this week
- A pipeline to transform images into valuable analysis items☆15Updated 4 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆61Updated 2 weeks ago
- A python package for Multiomics and Ecological Spatial Analysis (MESA)☆22Updated 7 months ago
- Image Processing Package for the Paper "Self-organization and symmetry breaking in intestinal organoid development"☆11Updated 5 years ago