giovp / spatialdata-sandbox
☆12Updated this week
Alternatives and similar repositories for spatialdata-sandbox:
Users that are interested in spatialdata-sandbox are comparing it to the libraries listed below
- Minimum Information about Tissue Imaging☆20Updated last year
- Single-cell spatial proteomics analysis that makes you happy!☆23Updated last week
- ☆52Updated 2 weeks ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆34Updated last week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Interoperability between SpatialData and the Xenium Explorer☆19Updated 7 months ago
- ☆48Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 9 months ago
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆17Updated last week
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆26Updated 6 months ago
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated 2 years ago
- A probabilistic cell typing algorithm for spatial transcriptomics.☆23Updated this week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆28Updated last month
- ☆25Updated 5 months ago
- Spatial Single-Cell Analysis Toolkit☆86Updated last month
- ☆17Updated 3 weeks ago
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆40Updated 8 months ago
- A plugin to visualise 3D spatial single cell omics☆22Updated 11 months ago
- ☆27Updated 5 months ago
- ☆30Updated last year
- https://sparrow-pipeline.readthedocs.io/en/latest/☆26Updated 2 weeks ago
- ☆29Updated 10 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆76Updated 3 weeks ago
- GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial Systems☆35Updated 2 months ago
- ☆34Updated 11 months ago
- Segmentation error aware clustering for multiplexed imaging☆15Updated 2 months ago
- Interactive visualization of spatial omics data☆51Updated this week
- comseg☆19Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆14Updated 3 years ago