giovp / spatialdata-sandboxLinks
☆13Updated 3 weeks ago
Alternatives and similar repositories for spatialdata-sandbox
Users that are interested in spatialdata-sandbox are comparing it to the libraries listed below
Sorting:
- Minimum Information about Tissue Imaging☆20Updated last year
- ☆68Updated this week
- Single-cell spatial proteomics analysis that makes you happy!☆38Updated last week
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆29Updated 3 months ago
- https://sparrow-pipeline.readthedocs.io/en/latest/☆31Updated 2 weeks ago
- ☆28Updated 11 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆51Updated last week
- A plugin to visualise 3D spatial single cell omics☆21Updated 2 months ago
- The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the single-cell results of MERSCOPE experiments.☆33Updated 11 months ago
- ☆57Updated this week
- ☆18Updated 3 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 2 months ago
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last month
- Interactive visualization of spatial omics data☆66Updated this week
- Spatialproteomics is a light weight wrapper around xarray with the intention to facilitate the data exploration and analysis of highly mu…☆33Updated this week
- Spatial Single-Cell Analysis Toolkit☆98Updated 2 months ago
- Integrated pipeline for multiplexed image analysis☆96Updated 5 months ago
- ☆27Updated 11 months ago
- Interoperability between SpatialData and the Xenium Explorer☆24Updated last year
- A probabilistic cell typing algorithm for spatial transcriptomics.☆24Updated this week
- ClusterMap for multi-scale clustering analysis of spatial gene expression☆46Updated 3 months ago
- A toolkit for processing multiplexed tissue images☆63Updated last month
- MERFISH decoding software☆26Updated 3 weeks ago
- Python API and Jupyter widget for Vitessce☆54Updated this week
- Framework for image and flow cytometry analysis☆28Updated last month
- Image registration (alignment) software for large microscopy images☆25Updated last year
- Static plotting for spatialdata☆65Updated this week
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆11Updated 2 years ago