pachterlab / FGP_2024Links
☆14Updated 7 months ago
Alternatives and similar repositories for FGP_2024
Users that are interested in FGP_2024 are comparing it to the libraries listed below
Sorting:
- ☆61Updated 5 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆29Updated last year
- CellNeighborEX: Deciphering Neighbor-Dependent Gene Expression from Spatial Transcriptomics Data☆16Updated last year
- ☆32Updated 11 months ago
- Integrative and Reference-Informed Spatial Domain Detection for Spatial Transcriptomics☆41Updated last year
- Unsupervised Inference of Developmental Directions for Single Cells☆23Updated 2 years ago
- Single-Cell Inference of Class Switch Recombination☆20Updated 2 months ago
- ☆30Updated 9 months ago
- Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics☆46Updated 5 months ago
- Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition☆62Updated last year
- Niche Interactions and Cellular Heterogeneity in Extracellular Signaling☆58Updated this week
- Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas☆39Updated 5 years ago
- Identifying external communication signals using single-cell transcriptomics data☆20Updated last year
- Analysis of imbalanced data and its impacts in a scRNA-seq integration setting☆31Updated 10 months ago
- We describe a transcriptional reference map of human natural killer (NK) cells based on analysis of scRNA-seq data from both blood and ti…☆14Updated last year
- ☆34Updated 3 months ago
- CeLEry: cell location recovery in single-cell RNA sequencing☆37Updated 11 months ago
- ☆16Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆80Updated 5 months ago
- STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …☆26Updated 2 years ago
- Code for major analyses in "Integrative spatial analysis reveals a multi-layered organization of glioblastoma" paper☆54Updated last year
- Code for single-cell eQTL analysis of memory T cell data in Nathan, et al. bioRxiv (2021)☆22Updated 2 years ago
- UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference☆27Updated last year
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆44Updated last year
- ☆40Updated 2 years ago
- NicheDE is a method that detects context dependent changes in gene expression in spatial transcriptomic data.☆23Updated 7 months ago
- RNA-velocity informed embeddings for visualizing cellular trajectories☆44Updated 3 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆43Updated 2 years ago
- ☆14Updated 6 months ago
- Code for a multimodal atlas of healthy and injured cell states and niches in the human kidney☆25Updated last year