Alternatives and similar repositories for SIMVI

Users that are interested in SIMVI are comparing it to the libraries listed below

• WPZgithub / CEFCON
  Deciphering driver regulators of cell fate decisions from single-cell RNA-seq data
  ☆24Updated 7 months ago
• dpeerlab / ENVI
  ☆48Updated last week
• tabdelaal / SpaGE
  Enhancing spatial transcriptomics data by predicting the expression of unmeasured genes from a dissociated scRNA-seq data
  ☆35Updated 11 months ago
• LiHongCSBLab / SOAPy
  ☆29Updated 3 months ago
• Teichlab / celcomen
  ☆14Updated 2 months ago
• wanglab-broad / CAST
  CAST package
  ☆38Updated 7 months ago
• bwalker1 / NeST
  ☆13Updated last year
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆25Updated 8 months ago
• QihuangZhang / CeLEry
  CeLEry: cell location recovery in single-cell RNA sequencing
  ☆35Updated 3 months ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆26Updated last month
• AllonKleinLab / cospar
  ☆26Updated last year
• Genentech / pascient
  ☆16Updated last month
• theislab / ncem_tutorials
  ☆13Updated 2 years ago
• ZJUFanLab / scCube
  an SRT simulator for simulating multiple spatial variability in spatial resolved transcriptomics and generating unbiased simulated SRT da…
  ☆24Updated 2 months ago
• KlugerLab / GeneTrajectory-python
  Python implementation of Gene Trajectory
  ☆25Updated 8 months ago
• davidliwei / PS
  Perturbation-response Score (PS) analysis is a method to quantify diverse perturbation responses and discover novel biological insights i…
  ☆14Updated last year
• raphael-group / CalicoST
  Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  ☆35Updated 3 weeks ago
• MICS-Lab / novae
  Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…
  ☆47Updated last week
• wanglabtongji / CCI
  Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
  ☆21Updated 2 years ago
• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆29Updated 3 weeks ago
• tanlabcode / CytoCommunity
  The first computational tool that enables both unsupervised and supervised discovery of tissue spatial domains
  ☆29Updated last month
• YangLabHKUST / Portal
  Adversarial domain translation networks for integrating large-scale atlas-level single-cell datasets
  ☆30Updated last year
• pachterlab / FGP_2024
  ☆14Updated 3 months ago
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• devsystemslab / snapseed
  ☆20Updated 2 months ago
• suinleelab / contrastiveVI
  ☆55Updated last year
• theislab / multicpa
  ☆14Updated 2 years ago
• SunXQlab / ESICCC
  ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods
  ☆12Updated last year
• theislab / scTab
  ☆58Updated 8 months ago
• YosefLab / velovi
  ☆39Updated this week