Alternatives and similar repositories for CODA:

Users that are interested in CODA are comparing it to the libraries listed below

• labsyspharm / orion-crc
  ☆14Updated 10 months ago
• KerenLab / CellSighter
  ☆30Updated last year
• michaellee1 / CellSeg
  ☆22Updated last year
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated 3 months ago
• MarkZaidi / Universal-StarDist-for-QuPath
  Transfer trained StarDist models across imaging modalities
  ☆3Updated 6 months ago
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆39Updated last month
• mahmoodlab / MAPS
  Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications
  ☆50Updated last year
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆84Updated this week
• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆51Updated last month
• cpath-ukk / grandqc
  GrandQC tool for tissue detection and quality control in pathology
  ☆31Updated 2 weeks ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆22Updated 3 months ago
• ekvall93 / ELD
  ☆28Updated 2 months ago
• WeisiX / ITAS3D
  Image-translation-assisted segmentation in 3D
  ☆26Updated 3 years ago
• ElementoLab / utag
  ☆34Updated 11 months ago
• BodenmillerGroup / SCPathology_publication
  The Single-Cell Pathology Landscape of Breast Cancer
  ☆25Updated 5 years ago
• SydneyBioX / BIDCell
  Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data
  ☆40Updated 8 months ago
• vanvalenlab / publication-figures
  Scripts capable of re-creating figures from Van Valen Lab publications
  ☆18Updated 2 years ago
• TheJacksonLaboratory / STQ
  Spatial Transcriptomics Quantification pipeline for 10x Visium and H&E-stained whole slide images
  ☆18Updated last month
• fuscc-deep-path / sc_MTOP
  sc-MTOP is an analysis framework based on deep learning and computational pathology. This framework aims to characterize the tumor ecosys…
  ☆29Updated 4 months ago
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆28Updated last month
• bryanhe / ST-Net
  Deep learning on histopathology images.
  ☆114Updated 3 years ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆81Updated 8 months ago
• qupath / qupath-extension-wsinfer
  QuPath extension to work with WSInfer - https://wsinfer.readthedocs.io/
  ☆23Updated last month
• AstroPathJHU / AstroPathPipeline
  The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …
  ☆18Updated last year
• huangzhii / IMPRESS
  ☆19Updated 2 years ago
• qupath / qupath-extension-instanseg
  The official QuPath extension for InstanSeg
  ☆14Updated last week
• jnkather / DeepHistology
  A pan-cancer platform for mutation prediction from routine histology
  ☆68Updated 3 years ago
• MathOnco / valis
  Virtual Alignment of pathoLogy Image Series
  ☆149Updated 3 months ago
• Henrik86 / Topological-tumour-graphs
  ☆11Updated 5 years ago
• djimenezsanchez / NaroNet
  Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifyin…
  ☆15Updated last year