tanlabcode / CelloTypeLinks
☆59Updated 10 months ago
Alternatives and similar repositories for CelloType
Users that are interested in CelloType are comparing it to the libraries listed below
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆46Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆63Updated last year
- ☆34Updated last year
- Integrated pipeline for multiplexed image analysis☆100Updated last week
- comseg☆24Updated 10 months ago
- ☆13Updated last month
- Accessible and interoperable whole slide image analysis☆171Updated 2 weeks ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- ☆154Updated last year
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆93Updated 2 years ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆39Updated 3 months ago
- Graph-based foundation model for spatial transcriptomics data. Zero-shot spatial domain inference, batch-effect correction, and many othe…☆95Updated 2 weeks ago
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆38Updated last year
- ☆40Updated last year
- Deciphering tumor ecosystems at super-resolution from spatial transcriptomics with TESLA☆63Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆104Updated this week
- Spatial Single-Cell Analysis Toolkit☆105Updated last week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆66Updated 3 weeks ago
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆37Updated 3 years ago
- ☆36Updated 2 years ago
- Single-cell spatial proteomics analysis that makes you happy!☆48Updated last week
- A pixel classification based multiplexed image segmentation pipeline☆103Updated 2 years ago
- ☆62Updated last week
- Modular pipeline for integrated analysis of the tumour microenvironment using multiplex imaging☆13Updated 4 months ago
- Self-Supervised Vision Transformers for multiplexed imaging datasets☆60Updated last year
- version 1 scripts for CODA☆59Updated last year
- A pipeline to transform images into valuable analysis items☆17Updated 6 months ago
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago