tanlabcode / CelloTypeLinks
☆54Updated 7 months ago
Alternatives and similar repositories for CelloType
Users that are interested in CelloType are comparing it to the libraries listed below
Sorting:
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆45Updated last year
- Sub-cellular spatial transcriptomics Cell Segmentation☆68Updated 2 years ago
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆59Updated last year
- Integrated pipeline for multiplexed image analysis☆97Updated 6 months ago
- Accessible and interoperable whole slide image analysis☆137Updated last week
- Spatial Single-Cell Analysis Toolkit☆99Updated 3 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆43Updated 4 months ago
- Super-resolved spatial transcriptomics by deep data fusion☆74Updated 2 years ago
- DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images☆54Updated 2 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆62Updated 4 months ago
- ☆142Updated 9 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- ☆32Updated 9 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- A pixel classification based multiplexed image segmentation pipeline☆101Updated last year
- The Single-Cell Pathology Landscape of Breast Cancer☆27Updated 5 years ago
- ☆35Updated last week
- ☆59Updated this week
- Self-supervised representation learning combining GTEx histology, RNA-seq and WGS☆31Updated 5 months ago
- A spatial omics data analysis tool that enables both unsupervised and supervised discovery of complex tissue cellular neighborhoods from …☆24Updated 5 months ago
- comseg☆24Updated 8 months ago
- ☆39Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last month
- ☆13Updated last month
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆37Updated last year
- Multiple-choice microscopy pipeline☆135Updated this week
- MUSE is a deep learning approach characterizing tissue composition through combined analysis of morphologies and transcriptional states f…☆35Updated 3 years ago
- ☆11Updated 5 years ago
- A toolkit for processing multiplexed tissue images☆64Updated last week
- ☆34Updated last year