Alternatives and similar repositories for phippery

Users that are interested in phippery are comparing it to the libraries listed below

• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 3 months ago
• athchen / beer
  Bayesian enrichment estimation in R
  ☆11Updated 2 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆19Updated 2 years ago
• cinquin / MEME
  MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks
  ☆10Updated 7 years ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 4 months ago
• TrinityCTAT / CTAT-VirusIntegrationFinder
  ☆16Updated last year
• bassanilab / NeoDisc
  NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…
  ☆12Updated 7 months ago
• gerstung-lab / deepSNV
  The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.
  ☆14Updated 3 years ago
• jiujiezz / tsnad
  Detecting somatic mutations and predicting tumor-specific neo-antigens
  ☆28Updated 3 years ago
• dakwok / SSNIP
  The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…
  ☆19Updated last month
• Immunotools / IgDetective
  a tool for annotation of immunoglobulin genes in genome assemblies
  ☆11Updated 3 months ago
• NBISweden / IgDiscover-legacy
  Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
  ☆17Updated last year
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆20Updated 2 years ago
• ohlerlab / RiboseQC
  Pipeline for Quality Control of Ribo-Seq data, selection of P-site offsets, and codon usage statistics.
  ☆18Updated last year
• pachterlab / qcbc
  ☆19Updated last week
• flemingtonlab / SpliceTools
  ☆17Updated 10 months ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• hart-lab / bagel
  BAGEL software
  ☆27Updated last year
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• bbglab / openvariant
  Read, parse and operate different multiple input file formats with OpenVariant
  ☆12Updated last week
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆16Updated last week
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 4 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆39Updated 2 years ago
• XPRESSyourself / XPRESSpipe
  An alignment and analysis pipeline for Ribosome Profiling and RNA-seq data
  ☆13Updated 11 months ago
• nf-core / omicsgenetraitassociation
  A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
  ☆10Updated last year
• complextissue / pytximport
  Feature-rich Python implementation of the tximport package for gene count estimation.
  ☆36Updated last week
• abodein / timeOmics
  Time-Course Multi-Omics data integration
  ☆25Updated last year
• LukszaLab / NeoantigenEditing
  ☆14Updated 3 years ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆24Updated 9 months ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆12Updated last month