matsengrp / phipperyLinks
☆19Updated 10 months ago
Alternatives and similar repositories for phippery
Users that are interested in phippery are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 7 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Bayesian enrichment estimation in R☆11Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 5 years ago
- ☆20Updated 3 months ago
- isoCirc☆10Updated last year
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆11Updated 8 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆14Updated 6 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 8 months ago
- ☆16Updated last year
- ORF Quantification pipeline for Alternative Splicing☆16Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 7 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆19Updated last year
- A script to make downloading of SRA/GEO data easier☆31Updated last year
- A python package for showing JBrowse views☆26Updated last year
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- SCASA: Single cell transcript quantification tool☆21Updated last year
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated 2 years ago
- Ultra-fast 5' and 3' demultiplexer