matsengrp / phipperyLinks
☆19Updated last year
Alternatives and similar repositories for phippery
Users that are interested in phippery are comparing it to the libraries listed below
Sorting:
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 10 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- Bayesian enrichment estimation in R☆11Updated 3 weeks ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆19Updated 3 years ago
- MEME motif-based sequence analysis tools (http://meme-suite.org), with FreeBSD tweaks☆13Updated 8 years ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Updated 2 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated 2 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆17Updated 3 years ago
- ☆17Updated last year
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆15Updated 6 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Updated last year
- ☆16Updated last year
- A toolset for handling sequencing data with unique molecular identifiers (UMIs)☆16Updated 7 years ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆19Updated last week
- SCAN2 is a somatic SNV and indel genotyper for single cells amplified by Primary Template-Directed Amplification (PTA)☆16Updated 4 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- Method for performing genome-wide association like studies on neighborhoods identified on biological networks relevant for the phenotype …☆16Updated 2 years ago
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- FunctionaL Omics Processing platform☆13Updated last year
- Two pass alignment for long reads☆22Updated 4 years ago
- a tool for annotation of immunoglobulin genes in genome assemblies☆12Updated 2 months ago
- Ultra-fast 5' and 3' demultiplexer☆28Updated last year
- ☆20Updated 6 months ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆10Updated 7 years ago
- Analysis pipleine to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Updated last week
- Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis☆24Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Updated 6 years ago