Alternatives and similar repositories for lacss

Users that are interested in lacss are comparing it to the libraries listed below

• vanvalenlab / cellSAM
  Codebase for "A Foundation Model for Cell Segmentation"
  ☆164Updated 2 months ago
• jiyuuchc / cellcutter
  ☆19Updated last year
• constantinpape / torch-em
  Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.
  ☆112Updated this week
• juglab / EmbedSeg
  Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images
  ☆127Updated last year
• nadeemlab / ImPartial
  Interactive deep learning whole-cell segmentation and thresholding using partial annotations
  ☆41Updated last week
• Lee-Gihun / MEDIAR
  (NeurIPS 2022 CellSeg Challenge - 1st Winner) Open source code for "MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality …
  ☆156Updated last year
• funkelab / cellulus
  Unsupervised Instance Segmentation in Microscopy
  ☆26Updated last year
• computational-cell-analytics / patho-sam
  Segment Anything for Histopathology
  ☆55Updated 3 months ago
• MMV-Lab / mmv_im2im
  Python package for deep learning based image to image transformation
  ☆53Updated last month
• vanvalenlab / deepcell-label
  Cloud-based data annotation tools for biological images
  ☆84Updated last year
• AntonotnaWang / 3DCellSeg
  Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…
  ☆22Updated 2 years ago
• FZJ-INM1-BDA / celldetection
  Scalable Instance Segmentation using PyTorch & PyTorch Lightning.
  ☆145Updated 8 months ago
• instanseg / instanseg
  ☆205Updated this week
• vanvalenlab / intro-to-deepcell
  An introduction to deepcell and deep learning
  ☆155Updated last year
• cellimnet / scellseg-publish
  A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.
  ☆10Updated last year
• BiaPyX / BiaPy
  Open source Python library for building bioimage analysis pipelines
  ☆187Updated last week
• TIO-IKIM / CellViT
  CellViT: Vision Transformers for Precise Cell Segmentation and Classification
  ☆352Updated 5 months ago
• lhaof / CellSeg
  The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge
  ☆15Updated 2 years ago
• kevinjohncutler / omnipose
  Omnipose: a high-precision solution for morphology-independent cell segmentation
  ☆135Updated last month
• marrlab / DinoBloom
  Blood Cell Foundation Model based on DINOv2
  ☆58Updated last year
• okunator / cellseg_models.pytorch
  Encoder-Decoder Cell and Nuclei segmentation models
  ☆95Updated last month
• PathologyDataScience / NuCLS
  NuCLS: A scalable crowdsourcing, deep learning approach and dataset for nucleus classification, localization and segmentation
  ☆55Updated 3 years ago
• sartorius-research / LIVECell
  ☆205Updated 2 years ago
• SchmollerLab / Cell_ACDC
  A Python GUI-based framework for segmentation, tracking and cell cycle annotations of microscopy data
  ☆189Updated this week
• ksugar / qupath-extension-sam
  QuPath extension for Segment Anything Model (SAM)
  ☆126Updated 5 months ago
• hthierno / pytorch-stardist
  PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes
  ☆26Updated 2 years ago
• jono-m / OrganoID
  ☆28Updated 2 years ago
• SBU-BMI / wsinfer
  🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images
  ☆84Updated last year
• WenChentao / 3DeeCellTracker
  A python algorithm for tracking cells in 3D deforming organs
  ☆66Updated last month
• BiomedicalMachineLearning / HEMnet
  A neural network software for using Molecular labelling to improve pathological annotation of H and E tissues
  ☆32Updated 11 months ago