jiyuuchc / lacss
A deep learning model for single cell segmentation from microsopy images.
☆36Updated this week
Alternatives and similar repositories for lacss
Users that are interested in lacss are comparing it to the libraries listed below
Sorting:
- ☆20Updated 6 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆87Updated last month
- An introduction to deepcell and deep learning☆147Updated 6 months ago
- Cloud-based data annotation tools for biological images☆79Updated last year
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Updated last year
- computer vision models for single-cell phenotyping☆46Updated this week
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆94Updated this week
- Unsupervised Instance Segmentation in Microscopy☆23Updated last year
- Python package for deep learning based image to image transformation☆53Updated 11 months ago
- Segment Anything for Histopathology☆27Updated last week
- ☆164Updated 3 weeks ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆24Updated 2 years ago
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆65Updated last month
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- multimodal whole slide image registration in a graph structure☆85Updated 10 months ago
- Repository for "SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology" (MedAGI2023, MICCAI2023 workshop)☆38Updated 7 months ago
- ☆108Updated 3 weeks ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆39Updated last month
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆78Updated 3 weeks ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 6 months ago
- Encoder-Decoder Cell and Nuclei segmentation models☆91Updated last week
- 🔥 🚀 Blazingly fast pipeline for patch-based classification in whole slide images☆69Updated 10 months ago
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- version 1 scripts for CODA☆44Updated last year
- Blazing fast nuclei segmentation for brightfield Whole Slide Images☆35Updated 3 months ago
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆112Updated this week
- A tool for rapidly labeling objects using deep learning feature embedding☆32Updated 9 months ago
- Open source Python library for building bioimage analysis pipelines☆170Updated this week