jiyuuchc / lacss
A deep learning model for single cell segmentation from microsopy images.
☆35Updated this week
Alternatives and similar repositories for lacss:
Users that are interested in lacss are comparing it to the libraries listed below
- ☆20Updated 4 months ago
- Codebase for "A Foundation Model for Cell Segmentation"☆73Updated last week
- Cloud-based data annotation tools for biological images☆78Updated last year
- An introduction to deepcell and deep learning☆144Updated 5 months ago
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 4 years ago
- computer vision models for single-cell phenotyping☆43Updated this week
- ☆23Updated last year
- simple package for augmentation of n-dimensional arrays☆32Updated last year
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆21Updated last year
- A style-aware deep learning model for adaptive cell instance segmentation by contrastive fine-tuning.☆10Updated 11 months ago
- ☆31Updated 2 years ago
- ☆150Updated 2 weeks ago
- Code Implementation for EmbedSeg, an Instance Segmentation Method for Microscopy Images☆114Updated last year
- Unsupervised Instance Segmentation in Microscopy☆21Updated 11 months ago
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆52Updated 4 months ago
- Python package for deep learning based image to image transformation☆52Updated 9 months ago
- Deep-learning based semantic and instance segmentation for 3D Electron Microscopy and other bioimage analysis problems based on pytorch.☆88Updated 2 weeks ago
- PyTorch implementation of 2D and 3D StarDist - Object Detection with Star-convex Shapes☆22Updated 2 years ago
- Part 1 of Allen Cell and Structure Segmenter: classic image segmentation workflow☆28Updated 7 months ago
- StarDist PyTorch☆45Updated 2 years ago
- Open source Python library for building bioimage analysis pipelines☆139Updated this week
- ☆10Updated 4 years ago
- Interactive deep learning whole-cell segmentation and thresholding using partial annotations☆36Updated last week
- QuPath extension for Segment Anything Model (SAM)☆103Updated last week
- The code of SRIBD-Med Team for NeurIPS2022 Cell Segmentation Challenge☆15Updated last year
- Track cells and build cell lineages☆33Updated 7 months ago
- ☆31Updated 2 years ago
- Re-stained whole slide image alignment☆32Updated last year
- Omnipose: a high-precision solution for morphology-independent cell segmentation☆108Updated this week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆50Updated last year