☆11Sep 23, 2022Updated 4 years ago
Alternatives and similar repositories for PGGSVpipeline
Users that are interested in PGGSVpipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity☆12Feb 25, 2026Updated 7 months ago
- Extremely fast BAM depth calculation for WGS, exome, or targeted sequencing☆13Jan 25, 2019Updated 7 years ago
- HaploSweep is a method for detecting and categorizing soft and hard selective sweeps based on haplotype structure.☆11Sep 24, 2024Updated 2 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Benchmarking of CNV calling tools☆20May 18, 2019Updated 7 years ago
- The GitHub for CLUES2, a method for inferring and evaluating evidence for selection.☆22Apr 9, 2025Updated last year
- ☆36Aug 18, 2024Updated 2 years ago
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆62Jul 27, 2026Updated 2 months ago
- Summarise and plot data from long-read ONT (direct RNA/cDNA) BAM files☆16Apr 4, 2024Updated 2 years ago
- Derives consensus sequences from a set of long noisy reads by clustering and error correction.☆17Jul 20, 2021Updated 5 years ago
- ☆51Aug 27, 2019Updated 7 years ago
- Comprehensive benchmark of structural variant callers☆49Feb 4, 2021Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆37Mar 4, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Implementation of Retention-Network in PyTorch☆17Aug 12, 2023Updated 3 years ago
- This script use to analyze the immune repertoire sequenced by high throughtput sequencing☆28Dec 16, 2021Updated 4 years ago
- Structural variant merging tool☆57Aug 23, 2024Updated 2 years ago
- Companion repository for the human variant calling pipeline comparison paper☆12Feb 21, 2022Updated 4 years ago
- Learn to use Support Vector Machines in Python(sklearn) and R☆10Aug 16, 2017Updated 9 years ago
- Structural Variation breakpoint discovery via adaptive learning☆17Jul 6, 2023Updated 3 years ago
- Rapid and accurate ancestry inference using SNVs.☆30Aug 15, 2025Updated last year
- GWAS Survival Package in R☆13Jun 12, 2026Updated 3 months ago
- This repository contains information about ongoing analysis performed by GIAB☆14Aug 30, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- ☆15May 22, 2025Updated last year
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 3 years ago
- An efficient tool for cross-population fixation index estimation on variant call format files☆11Mar 1, 2026Updated 6 months ago
- Upscaling SV detection to a multi-population level.☆22Jul 28, 2025Updated last year
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- Tool to find regions of homozygosity (ROHs) from sequencing data.☆37Jun 17, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Tutorial for STAR-Fusion, FusionInspector, and de novo reconstruction of fusion transcripts using Trinity☆14Nov 21, 2019Updated 6 years ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- Assessing confidence in introgression among four populations☆29Apr 19, 2021Updated 5 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- Kmer Analysis of Pileups for Genotyping☆41Jul 16, 2026Updated 2 months ago
- R-code used for single-cell RNA-Seq analysis of kidney data.☆18Oct 17, 2019Updated 6 years ago
- Workflow for processing Illumina sequencing runs for ancient human DNA☆28Oct 29, 2020Updated 5 years ago