Programs to analyse NGS data for population genetics purposes
☆182Aug 27, 2024Updated 2 years ago
Alternatives and similar repositories for ngsTools
Users that are interested in ngsTools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Program for analysing NGS data.☆268Mar 6, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆178Jan 20, 2024Updated 2 years ago
- Population genetic summary statistics☆40Sep 28, 2023Updated 3 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆53Nov 13, 2023Updated 2 years ago
- Scripts to calculate population genetics statistics☆55Jul 20, 2018Updated 8 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 4 years ago
- ☆50Jun 26, 2026Updated 3 months ago
- Population genetics analyses from NGS data☆28Mar 8, 2021Updated 5 years ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 3 years ago
- C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings☆686Oct 2, 2026Updated last week
- Code to compute the XP-CLR statistic to infer natural selection☆108Jun 13, 2022Updated 4 years ago
- Efficient program for calculating Extended Haplotype Homozygosity (EHH) and Integrated Haplotype Score (iHS)☆45Oct 24, 2019Updated 6 years ago
- command-line tools for the management of genotype likelihoods and allele counts☆30Jun 17, 2026Updated 3 months ago
- General tools for genomic analyses.☆396Mar 25, 2026Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Population genetics notes☆705Jun 1, 2023Updated 3 years ago
- ☆16Mar 20, 2023Updated 3 years ago
- Tools and Utilities for msmc and msmc2☆51Jan 23, 2026Updated 8 months ago
- Tools for F1 hybrid PSMC (hPSMC) divergence time inference from whole genomes☆15May 29, 2024Updated 2 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆192Dec 19, 2024Updated last year
- Haplotype based scans for selection☆150Jun 5, 2026Updated 4 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆43Nov 15, 2023Updated 2 years ago
- mixture classification, constraint optimization, outlier detection, population structure, admixture history, and selection detection.☆90Jun 14, 2021Updated 5 years ago
- Tools test whether admixture occurred and more☆235Jul 13, 2026Updated 3 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Population genetics analyses☆23Oct 10, 2019Updated 7 years ago
- A primer for computational tools to analyze genetics of populations in R☆92Sep 11, 2026Updated last month
- Tutorials on phylogenetic and phylogenomic inference☆402Apr 12, 2026Updated 6 months ago
- Estimate recombination rates from population genetic data☆71Jun 10, 2020Updated 6 years ago
- Quantifying Introgression via Branch Lengths☆59Sep 30, 2022Updated 4 years ago
- Assessing confidence in introgression among four populations☆29Apr 19, 2021Updated 5 years ago
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Tutorial about R package PopGenome☆44Mar 1, 2019Updated 7 years ago
- Tutorials on evolutionary genomics☆48Mar 11, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods for examining PCA locally along the genome.☆91Aug 13, 2024Updated 2 years ago
- Sweep Inference Framework (controlling for correlation)☆29Jul 10, 2024Updated 2 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆182Apr 17, 2026Updated 5 months ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 13 years ago
- ☆24Jun 9, 2017Updated 9 years ago
- ☆73Dec 5, 2022Updated 3 years ago
- adegenet: a R package for the multivariate analysis of genetic markers☆202Feb 7, 2025Updated last year