Alternatives and similar repositories for ngsTools:

Users that are interested in ngsTools are comparing it to the libraries listed below

• lh3 / psmc
  Implementation of the Pairwise Sequentially Markovian Coalescent (PSMC) model
  ☆162Updated 2 years ago
• mossmatters / HybPiper
  Recovering genes from targeted sequence capture data
  ☆119Updated 2 months ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆168Updated 3 months ago
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆161Updated last year
• voichek / kmersGWAS
  A library for running k-mers based GWAS
  ☆107Updated 4 months ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆116Updated 3 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆85Updated 3 years ago
• jpuritz / dDocent
  a bash pipeline for RAD sequencing
  ☆55Updated last month
• isaacovercast / easySFS
  Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …
  ☆149Updated 7 months ago
• eead-csic-compbio / get_homologues
  GET_HOMOLOGUES: a versatile software package for pan-genome analysis
  ☆113Updated 2 weeks ago
• rajanil / fastStructure
  A variational framework for inferring population structure from SNP genotype data.
  ☆136Updated 2 years ago
• tatumdmortimer / popgen-stats
  Scripts to calculate population genetics statistics
  ☆55Updated 6 years ago
• TickingClock1992 / RIdeogram
  ☆170Updated 4 years ago
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆132Updated 2 years ago
• ANGSD / angsd
  Program for analysing NGS data.
  ☆235Updated 2 weeks ago
• szpiech / selscan
  Haplotype based scans for selection
  ☆123Updated this week
• chrishah / MITObim
  MITObim - mitochondrial baiting and iterative mapping
  ☆112Updated 4 years ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆197Updated last year
• nt246 / lcwgs-guide-tutorial
  ☆85Updated 3 years ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆88Updated 10 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆184Updated last year
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆111Updated last year
• jtlovell / GENESPACE
  ☆199Updated last month
• ksamuk / pixy
  Software for painlessly estimating average nucleotide diversity within and between populations
  ☆125Updated 2 weeks ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆121Updated 4 months ago
• ddarriba / jmodeltest2
  Automatically exported from code.google.com/p/jmodeltest2
  ☆77Updated 3 years ago
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆99Updated 11 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆307Updated last year
• grunwaldlab / Population_Genetics_in_R
  A primer for computational tools to analyze genetics of populations in R
  ☆87Updated 4 years ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆139Updated last year