Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
☆38Mar 4, 2024Updated 2 years ago
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆44Mar 7, 2024Updated 2 years ago
- common bioinformatic scripts☆17Apr 28, 2021Updated 4 years ago
- Open source tools and papers for structural variant analysis.☆12Feb 24, 2019Updated 7 years ago
- Topology weighting by iterative sampling of sub-trees☆86Jan 5, 2025Updated last year
- Detects and blacklists paralog RAD loci analyzed in Stacks or ipyrad, based on the McKinney 2017 method (doi:10.1111/1755-0998.12613)☆10Sep 4, 2019Updated 6 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Bayesian analysis of genomic sequence data under the multispecies coalescent model☆111Mar 11, 2026Updated last week
- 一些关于基因组及转录组的知识☆40Dec 29, 2025Updated 2 months ago
- Best practices and workflow for genome annotation☆79Apr 14, 2025Updated 11 months ago
- Tutorials on evolutionary genomics☆46Mar 11, 2022Updated 4 years ago
- Tutorials on phylogenetic and phylogenomic inference☆395Sep 13, 2023Updated 2 years ago
- General tools for genomic analyses.☆387Feb 28, 2025Updated last year
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Oct 15, 2023Updated 2 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆21Jan 19, 2026Updated 2 months ago
- Heuristic search algorithm for fitting qpGraph models☆11Aug 4, 2022Updated 3 years ago
- Scripts used in the annotation of B10K genomes☆15Jun 1, 2020Updated 5 years ago
- ☆16Jan 6, 2022Updated 4 years ago
- Quantifying Introgression via Branch Lengths☆56Sep 30, 2022Updated 3 years ago
- software for UCE (and general) phylogenomics☆88Feb 27, 2026Updated 3 weeks ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆186Dec 19, 2024Updated last year
- IMa3☆13May 5, 2025Updated 10 months ago
- mPTP - a tool for single-locus species delimitation☆30Updated this week
- A massively parallel tool for model selection and tree inference on thousands of genes☆51Mar 4, 2024Updated 2 years ago
- A pipeline for de novo assembly of population-level sequence capture datasets.☆12Nov 6, 2018Updated 7 years ago
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- A new simple and efficient software to PCA and Cluster For popolation VCF File☆81Jun 25, 2025Updated 8 months ago
- MSMC2 Scripts☆28Sep 24, 2025Updated 5 months ago
- Hybridization detection using phylogenetic invariants☆52Oct 29, 2024Updated last year
- Simple pipeline to go from an alignment to a neutral model, using the PHAST toolkit☆11Jan 17, 2020Updated 6 years ago
- Calculate summary statistics and manipulate multiple sequence alignments☆91Jan 28, 2026Updated last month
- ☆11Nov 12, 2020Updated 5 years ago
- Accurate Species TRee ALgorithm☆275Apr 1, 2024Updated last year
- UCE Bioinformatics Pipeline☆17Sep 29, 2025Updated 5 months ago
- Joint inference of heterozygosity rates and runs of homozygosity☆18Dec 12, 2025Updated 3 months ago
- ☆24Jun 8, 2022Updated 3 years ago
- ☆38Apr 8, 2022Updated 3 years ago
- Version 5 of the CAFE phylogenetics software☆163Feb 12, 2025Updated last year
- A long-read SV calling pipeline☆12Aug 13, 2021Updated 4 years ago