ForBioPhylogenomics / tutorialsLinks
Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
☆37Updated last year
Alternatives and similar repositories for tutorials
Users that are interested in tutorials are comparing it to the libraries listed below
Sorting:
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- Tutorials on evolutionary genomics☆45Updated 3 years ago
- Materials for genome annotation sessions at the WORKSHOP ON GENOMICS, CESKY KRUMLOV☆16Updated 5 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- ☆40Updated last year
- Genome Annotation Pipeline☆36Updated 10 months ago
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆34Updated 4 months ago
- FASconCAT-G offers a wide range of possibilities to edit and concatenate multiple nucleotide, amino acid, and structure sequence alignmen…☆34Updated last year
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- A tool for plotting CAFE5 gene family expansion/contraction result☆31Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- ☆40Updated 2 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- MCMCtree tutorials☆24Updated last year
- ☆19Updated 2 years ago
- Quantifying Introgression via Branch Lengths☆52Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆27Updated 5 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated 2 weeks ago
- Likelihood-based Selective Sweep Detection☆38Updated last year
- ☆18Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- Code used to analyse WGS data of giraffe in Coimbra et al. 2021☆11Updated last year
- Automatic evaluation of HGTs☆29Updated 4 months ago
- A massively parallel tool for model selection and tree inference on thousands of genes☆49Updated last year
- Detecting natural selection from population-based genetic data☆27Updated 6 years ago
- MSMC2 Scripts☆24Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated 2 years ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago