nt246 / physalia-lcwgsLinks
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
☆68Updated 3 weeks ago
Alternatives and similar repositories for physalia-lcwgs
Users that are interested in physalia-lcwgs are comparing it to the libraries listed below
Sorting:
- Methods for examining PCA locally along the genome.☆86Updated last year
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- Repository for speciation genomics website☆26Updated 2 months ago
- Infer demographic history with the Moran model☆49Updated 5 months ago
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Presentations from the course☆38Updated 2 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆52Updated 7 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆32Updated last month
- Tutorial about R package PopGenome☆44Updated 6 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆23Updated 3 weeks ago
- Quantifying Introgression via Branch Lengths☆55Updated 3 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆27Updated 7 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆39Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆47Updated last year
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 6 years ago
- Graph-aware Retrieval of Selective Sweeps☆22Updated last year
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆25Updated 3 weeks ago
- ☆19Updated 7 years ago
- ☆42Updated 2 years ago
- Tutorials for bioinformatics and data analysis related to landscape genomics☆29Updated 6 years ago
- ☆18Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆17Updated 5 years ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆58Updated 2 weeks ago
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- GONE: Scripts, programs and an example data set☆47Updated 4 months ago