Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
☆74Oct 24, 2025Updated 11 months ago
Alternatives and similar repositories for physalia-lcwgs
Users that are interested in physalia-lcwgs are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆37Jan 21, 2026Updated 8 months ago
- ☆112Oct 14, 2021Updated 5 years ago
- Scripts for going from raw .fastq files to processed and quality-checked .bam files for downstream analysis☆14Nov 23, 2021Updated 4 years ago
- Pipelines for analyzing genomic or transcriptomic data☆17Feb 29, 2024Updated 2 years ago
- MJOLNIR Metabarcoding Joining Obitools & Linkage Networks In R☆18Sep 5, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Copy number variation detection using NGS data.☆21Oct 26, 2023Updated 2 years ago
- Programs for performing various population genetic analyses☆12Apr 5, 2026Updated 6 months ago
- Pipeline for GTseq genotyping and quality control☆17Jan 30, 2023Updated 3 years ago
- Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using…☆29Oct 6, 2026Updated last week
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆22Oct 2, 2019Updated 7 years ago
- ☆18Jun 30, 2023Updated 3 years ago
- A collection of tools useful for preparing or manipulating site-frequency spectrum (SFS) files☆21Mar 20, 2023Updated 3 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆16Dec 28, 2021Updated 4 years ago
- ☆19May 27, 2022Updated 4 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- A set of functions to visualise genotypes based on a VCF☆90Jan 28, 2022Updated 4 years ago
- Calculation of pairwise Linkage Disequilibrium (LD) under a probabilistic framework☆53Nov 13, 2023Updated 2 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Aug 25, 2022Updated 4 years ago
- Population Assignment using Genetic, Non-genetic or Integrated Data in a Machine-learning Framework. Methods in Ecology and Evolution.…☆16Sep 12, 2025Updated last year
- The Vertebrate Genomes Project Mitogenome Assembly Pipeline☆19Mar 26, 2023Updated 3 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆119Jun 24, 2025Updated last year
- strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.☆26Sep 6, 2026Updated last month
- Demographic analysis of Brassica oleracea☆10May 19, 2026Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆12May 24, 2022Updated 4 years ago
- RADseq workflow using STACKS☆62Updated this week
- Westlake BioBank for Chinese pilot project☆10May 17, 2023Updated 3 years ago
- small scripts, functions or bits of code for parsing genomic data☆14Sep 24, 2022Updated 4 years ago
- Trim, Align to genome, Deduplicate, Realign WGS sequencing samples☆18Feb 23, 2026Updated 7 months ago
- Cool Bioinformatics Scripts☆12May 21, 2024Updated 2 years ago
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Tutorials on phylogenetic and phylogenomic inference☆402Apr 12, 2026Updated 6 months ago
- ☆45May 8, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Classes for storing very large GWAS data sets and annotation, and functions for GWAS data cleaning and analysis☆18Mar 18, 2025Updated last year
- General tools for genomic analyses.☆396Mar 25, 2026Updated 6 months ago
- ☆28Apr 9, 2025Updated last year
- Codes for Vmap1.1 and Vmap3☆11Jan 5, 2026Updated 9 months ago
- metabaR is an R package to curate and visualise DNA metabarcoding data after basic bioinformatics analyses.☆19Jul 31, 2025Updated last year
- GONE: Scripts, programs and an example data set☆57May 12, 2026Updated 5 months ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆40May 21, 2024Updated 2 years ago