nt246 / physalia-lcwgsLinks
Files for the the Physalia course on Population genomic inference from low-coverage whole-genome sequencing data, Oct 10-13, 2022
☆60Updated 8 months ago
Alternatives and similar repositories for physalia-lcwgs
Users that are interested in physalia-lcwgs are comparing it to the libraries listed below
Sorting:
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- SambaR: Snp datA Management and Basic Analyses in R☆30Updated 2 months ago
- Infer demographic history with the Moran model☆47Updated last month
- ☆19Updated 7 years ago
- Software for ancestry estimation in unrelated individuals☆20Updated last month
- Leroy & Rougemont - “learning-by-doing” introduction to population genomics - scripts☆21Updated 5 years ago
- Population genetics analyses from NGS data☆25Updated 4 years ago
- ☆18Updated 2 years ago
- Scripts and resources for the haploblocks manuscript☆16Updated 5 years ago
- Tutorial on using popular tools for learning about population history☆51Updated 6 years ago
- R functions for generating site frequency spectra (SFS) from a VCF file.☆28Updated 5 years ago
- Repository for speciation genomics website☆26Updated 11 months ago
- Presentations from the course☆37Updated last year
- Whole-genome bioinformatic pipeline for pooled or individual-based NGS data using bash and R☆21Updated 3 years ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Graph-aware Retrieval of Selective Sweeps☆21Updated 10 months ago
- GONE: Scripts, programs and an example data set☆48Updated last year
- Quantifying Introgression via Branch Lengths☆53Updated 2 years ago
- Tutorial about R package PopGenome☆42Updated 6 years ago
- Tools and Utilities for msmc and msmc2☆48Updated last year
- UCE Bioinformatics Pipeline☆16Updated 7 months ago
- LDna: an R package to perform linkage disequilibrium network analysis☆31Updated last year
- ☆40Updated last year
- Scripts for population genetics analysis☆20Updated 2 years ago
- Assessing confidence in introgression among four populations☆27Updated 4 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆15Updated 9 months ago
- loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…☆17Updated last month
- Code and binaries related to processing haplotagging data☆15Updated 3 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago