Alternatives and similar repositories for physalia-lcwgs:

Users that are interested in physalia-lcwgs are comparing it to the libraries listed below

• speciationgenomics / speciationgenomics.github.io
  Repository for speciation genomics website
  ☆24Updated 8 months ago
• mennodejong1986 / SambaR
  SambaR: Snp datA Management and Basic Analyses in R
  ☆28Updated last month
• clairemerot / angsd_pipeline
  ☆26Updated last year
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆18Updated 3 weeks ago
• sudmantlab / loco-pipe
  loco-pipe is an automated Snakemake pipeline that streamlines a set of essential population genomic analyses for low-coverage whole genom…
  ☆17Updated 2 months ago
• enormandeau / stacks_workflow
  RADseq workflow using STACKS
  ☆57Updated last week
• carolindahms / TreeMix
  Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…
  ☆32Updated last year
• simonhmartin / twisst
  Topology weighting by iterative sampling of sub-trees
  ☆74Updated 2 months ago
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• miriammiyagi / QuIBL
  Quantifying Introgression via Branch Lengths
  ☆50Updated 2 years ago
• mfoll / BayeScan
  Detecting natural selection from population-based genetic data
  ☆27Updated 6 years ago
• jessicarick / msmc2_scripts
  MSMC2 Scripts
  ☆24Updated last year
• esayyari / DiscoVista
  ☆39Updated last year
• popgenmethods / momi2
  Infer demographic history with the Moran model
  ☆47Updated last month
• AntonelliLab / seqcap_processor
  Bioinformatic pipeline for processing Sequence Capture data for Phylogenetics
  ☆21Updated last year
• shenglin-liu / vcf2sfs
  R functions for generating site frequency spectra (SFS) from a VCF file.
  ☆27Updated 5 years ago
• jbpease / dfoil
  DFOIL: Introgression Testing for Five Taxa
  ☆30Updated 3 years ago
• speciationgenomics / presentations
  Presentations from the course
  ☆36Updated last year
• dportik / dadi_pipeline
  An accessible and flexible tool for fitting demographic models with dadi using custom or published models (available here), conducting go…
  ☆64Updated 11 months ago
• jasonleebrown / UCE_phyluce_pipeline
  UCE Bioinformatics Pipeline
  ☆15Updated 4 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• petrikemppainen / LDna
  LDna: an R package to perform linkage disequilibrium network analysis
  ☆31Updated 11 months ago
• pblischak / HyDe
  Hybridization detection using phylogenetic invariants
  ☆46Updated 5 months ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 6 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆49Updated 2 months ago
• kr-colab / diploSHIC
  feature-based deep learning for the identification of selective sweeps
  ☆54Updated last week
• BenjaminPeter / rangeexpansion
  ☆13Updated 7 years ago
• rtfcoimbra / Coimbra-et-al-2021_CurrBiol
  Code used to analyse WGS data of giraffe in Coimbra et al. 2021
  ☆11Updated last year
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆77Updated 7 months ago
• mmatschiner / F4
  Assessing confidence in introgression among four populations
  ☆27Updated 3 years ago