Alternatives and similar repositories for IGEGRNS

Users that are interested in IGEGRNS are comparing it to the libraries listed below

• Roy-lab / scMTNI
  ☆30Updated last month
• kaizhang / single-cell-benchmark
  ☆10Updated 2 years ago
• ejarmand / comparative_epigenomic_motor_cortex
  ☆10Updated 9 months ago
• shmohammadi86 / SCINET
  ☆18Updated 4 years ago
• zhoujt1994 / scHiCluster
  ☆68Updated 3 months ago
• Teddy-XiongGZ / DeepGSEA
  ☆17Updated last year
• cantinilab / HuMMuS
  Molecular interactions inference from single-cell multi-omics data
  ☆27Updated 3 weeks ago
• ma-compbio / scGHOST
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, genome subcompartment
  ☆20Updated last year
• datapplab / AutoClass
  ☆44Updated 3 years ago
• josephreplogle / guide_calling
  Tools for sgRNA calling in direct capture Perturb-seq data
  ☆37Updated 2 years ago
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 8 months ago
• quon-titative-biology / scProjection
  Projecting RNA measurements onto single cell atlases to extract cell type-specific expression profiles using scProjection
  ☆15Updated 2 years ago
• gambalab / gficf
  An R implementation of the Gene Frequency - Inverse Cell Frequency method for single cell data normalization
  ☆18Updated 2 years ago
• OSU-BMBL / scGNN2.0
  ☆12Updated last year
• jiang-junyao / IReNA
  R package IReNA
  ☆28Updated 10 months ago
• cliffren / PENCIL
  PENCIL is a novel tool for singlecell data analysis to identify phenotype associated subpopulations and informative genes simultaneously.
  ☆28Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last week
• forrest-lab / NATMI
  NATMI: Network Analysis Toolkit for the Multicellular Interactions
  ☆35Updated 4 years ago
• emiraldi / infTRN_lassoStARS
  Transcriptional regulatory network inference from gene expression and prior information with LASSO-StARS
  ☆15Updated 3 years ago
• mvinyard / ArchR-h5ad
  Parse ArchR arrow files to anndata h5ad
  ☆15Updated last year
• saezlab / FootprintMethods_on_scRNAseq
  Robustness and applicability of transcription factor and pathway analysis tools on single-cell RNA-seq data
  ☆27Updated 5 years ago
• xiaoyeye / TFvelo
  ☆45Updated last year
• WanluLiuLab / scAtlasVAE
  ☆38Updated 3 months ago
• mcgilldinglab / UNAGI
  Unagi: Deep Generative Model for Deciphering Cellular Dynamics and In-Silico Drug Discovery in Complex Diseases.
  ☆36Updated 3 months ago
• chriscainx / gastric-cancer
  ☆15Updated 2 years ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆27Updated 2 years ago
• immunogenomics / TiRP
  code repository for Lagattuta et al. "Repertoire analyses reveal T cell receptor sequence features that influence T cell fate." Nat. Imm.…
  ☆13Updated 7 months ago
• netbiolab / scHumanNet
  Analysis cell-type-specific functional gene network, with SCINET and HumanNetv3
  ☆43Updated 3 weeks ago
• AllenInstitute / scrattch.bigcat
  iterative clustering pipeline of big single cell datasets.
  ☆33Updated 3 weeks ago
• DongqingSun96 / STRIDE
  STRIDE (Spatial TRanscRIptomics DEconvolution by topic modelling) is a cell-type deconvolution tool for spatial transcriptomics by using …
  ☆17Updated 3 years ago