Alternatives and similar repositories for metabolomics

Users that are interested in metabolomics are comparing it to the libraries listed below

• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆13Updated 11 months ago
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆17Updated 11 months ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 4 years ago
• rformassspectrometry / book
  R for Mass Spectrometry documentation
  ☆12Updated 4 months ago
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 6 months ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 3 years ago
• wenbostar / metaX
  metaX: a flexible and comprehensive software for processing omics data.
  ☆25Updated 2 years ago
• dgrapov / CTSgetR
  R interface to Chemical Translation Service (CTS)
  ☆17Updated last year
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 4 months ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆16Updated this week
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆21Updated 4 years ago
• nasqar / ClusterProfShinyORA
  A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
  ☆12Updated 5 years ago
• Nextflow4Metabolomics / nextflow4ms-dial
  Nextflow-powered MS-DIAL
  ☆10Updated 9 months ago
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆35Updated 2 months ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Updated last year
• ualr-Rgroup / metabolomics-in-r
  Supporting material for "Processing and visualization of metabolomics data using R"
  ☆20Updated 8 years ago
• BaderLab / EnrichmentMapApp
  The EnrichmentMap Cytoscape App allows you to visualize the results of gene-set enrichment as a network.
  ☆35Updated last year
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆17Updated 7 months ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆62Updated 2 weeks ago
• datapplab / SBGNview
  ☆28Updated 2 years ago
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated 6 months ago
• OSU-BMBL / IRIS
  A Shiny web server for interactive visualization and analysis of RNA-seq data
  ☆22Updated 4 years ago
• xia-lab / MetaboAnalyst_Docker
  Docker for MetaboAnalyst 4.0
  ☆24Updated 4 years ago
• jsychong / MetaboAnalystR
  ☆10Updated 6 years ago
• workflow4metabolomics / workflow4metabolomics
  Workflow4Metabolomics meta repository
  ☆11Updated 5 months ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated last week
• andreasmock / MetaboDiff
  ☆32Updated 5 years ago
• Viant-Metabolomics / Galaxy-M
  Metabolomics Tools for Galaxy
  ☆21Updated 8 years ago