Alternatives and similar repositories for metabolomics

Users that are interested in metabolomics are comparing it to the libraries listed below

• cwieder / py-ssPA
  Single sample pathway analysis tools for omics data
  ☆13Updated last year
• cwieder / PathIntegrate
  PathIntegrate Python package for pathway-based multi-omics data integration
  ☆17Updated last year
• Accio / KEGGgraph
  The KEGGgraph package to parse KEGG pathways in R into graph objects
  ☆14Updated 7 months ago
• dgrapov / CTSgetR
  R interface to Chemical Translation Service (CTS)
  ☆17Updated last year
• rformassspectrometry / MsCoreUtils
  Core Utils for Mass Spectrometry Data
  ☆17Updated 2 weeks ago
• mohimanilab / MetaMiner
  a metabologenomic pipeline integrating metabolomic and genomic data to identify novel RiPPs and their BGCs
  ☆12Updated 4 years ago
• Nextflow4Metabolomics / nextflow4ms-dial
  Nextflow-powered MS-DIAL
  ☆10Updated 10 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆24Updated 6 months ago
• rformassspectrometry / book
  R for Mass Spectrometry documentation
  ☆14Updated 3 weeks ago
• saezlab / ShinyFUNKI
  FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…
  ☆14Updated 3 years ago
• bio2bel / kegg
  A Bio2BEL package for integrating pathway-related information from KEGG in BEL
  ☆13Updated 3 years ago
• workflow4metabolomics / workflow4metabolomics
  Workflow4Metabolomics meta repository
  ☆11Updated 6 months ago
• WandeRum / MVI-evaluation
  Missing value imputation and evaluation, especially for metabolomics data sets
  ☆19Updated 7 years ago
• Viant-Metabolomics / Galaxy-M
  Metabolomics Tools for Galaxy
  ☆21Updated 9 years ago
• barupal / ChemRICH
  Chemical Similarity Enrichment analysis of metabolomics datasets
  ☆30Updated last year
• rformassspectrometry / QFeatures
  Quantitative features for mass spectrometry data
  ☆28Updated last month
• metabolomics-cloud / mummichog
  pathway and network analysis for metabolomics
  ☆43Updated this week
• b2slab / FELLA
  FELLA: an R package for Metabolomics data enrichment through diffusion
  ☆22Updated 4 years ago
• mwang87 / GNPS_MASST
  ☆14Updated 3 weeks ago
• jaspershen / MetNormalizer
  MetNormalizer is used to normalize large scale metabolomics data.
  ☆22Updated 4 years ago
• jorainer / ensembldb
  This is the ensembldb development repository.
  ☆36Updated 3 months ago
• hhabra / metabCombiner
  metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation
  ☆13Updated last year
• yafeng / DEqMS
  DEqMS is a tool for quantitative proteomic analysis
  ☆24Updated 7 months ago
• nasqar / ClusterProfShinyORA
  A web-based application to perform Over-Representation Analysis (ORA) using clusterProfiler and shiny R libraries
  ☆12Updated 5 years ago
• gexijin / iDEP-old-version
  iDEP: integrated Differential Expression & Pathway analysis
  ☆14Updated 6 years ago
• saezlab / MetaProViz
  R-package to perform metabolomics pre-processing, differential metabolite analysis, metabolite clustering and custom visualisations.
  ☆16Updated last week
• ualr-Rgroup / metabolomics-in-r
  Supporting material for "Processing and visualization of metabolomics data using R"
  ☆20Updated 8 years ago
• YuLab-SMU / meshes
  MeSH Enrichment and Semantic analyses
  ☆12Updated last month
• rformassspectrometry / metaRbolomics-book
  The MetaRbolomics book. A review of R packages in BioC, CRAN, gitlab and github.
  ☆34Updated 4 years ago
• moosa-r / rbioapi
  rbioapi: User-Friendly R Interface to Biologic Web Services' API
  ☆22Updated last month