shuxiaoc / maxfuseLinks
☆55Updated last year
Alternatives and similar repositories for maxfuse
Users that are interested in maxfuse are comparing it to the libraries listed below
Sorting:
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆59Updated 2 months ago
- Python implementation of Milo for differential abundance testing on KNN graph☆74Updated 6 months ago
- CAST package☆40Updated 10 months ago
- Spatial direct messaging detected by bivariate Moran☆27Updated last month
- ☆50Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆64Updated last week
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆45Updated 4 years ago
- End-to-end analysis of spatial multi-omics data☆93Updated last month
- Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases☆33Updated last month
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆130Updated last week
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆22Updated 2 years ago
- Single cell omics biology annotations☆51Updated 4 months ago
- Probabilistic Alignment of Spatial Transcriptomics Experiments v.2☆38Updated 6 months ago
- SPROD: Spatial expression profiling de-noising☆37Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- Predict RNA velocity through deep learning☆70Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆64Updated 2 months ago
- ☆61Updated last month
- Probabilistic Alignment of Spatial Transcriptomics Experiments☆94Updated 6 months ago
- ☆54Updated 10 months ago
- Non-parametric density inference for single-cell analysis.☆72Updated 3 months ago
- Gene group activity utility functions for Scanpy☆87Updated 8 months ago
- ☆45Updated last month
- Compendium of available lists of ligand-receptor pairs and surface-secreted protein interactions.☆139Updated 2 years ago
- TACCO: Transfer of Annotations to Cells and their COmbinations☆55Updated last week
- ☆13Updated 3 years ago
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆113Updated last year
- ☆59Updated last year
- CeLEry: cell location recovery in single-cell RNA sequencing☆35Updated 7 months ago
- ☆46Updated last year