shuxiaoc / maxfuse
☆50Updated 10 months ago
Alternatives and similar repositories for maxfuse:
Users that are interested in maxfuse are comparing it to the libraries listed below
- Tutorials for the SCOG Virtual Workshop ‘Spatial transcriptomics data analysis in Python’ - May 23-24, 2022☆53Updated 2 years ago
- Awesome list of tools and methods to perform spatial transcriptomic data analysis.☆40Updated 3 years ago
- Gene group activity utility functions for Scanpy☆71Updated 3 months ago
- Spatial direct messaging detected by bivariate Moran☆26Updated 2 months ago
- A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.☆113Updated last week
- Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics☆44Updated last month
- Python implementation of Milo for differential abundance testing on KNN graph☆64Updated last month
- MARIO: single-cell proteomic data matching and integration using both shared and distinct features☆23Updated last year
- A data pipeline built in Nextflow to process spatial and single-cell experiment data for visualisation in WebAtlas☆60Updated this week
- End-to-end analysis of spatial multi-omics data☆65Updated 3 weeks ago
- Predict RNA velocity through deep learning☆67Updated last year
- Accelerated, Python-only, single-cell integration benchmarking metrics☆56Updated this week
- Single cell omics biology annotations☆51Updated last month
- ☆31Updated 3 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 10 months ago
- A python port of the R package SCTransform:☆19Updated 3 years ago
- ☆46Updated last week
- GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data☆48Updated 2 months ago
- Single-Cell Clustering Assessment Framework☆99Updated last year
- R implementation of GeneTrajectory☆58Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆110Updated last year
- This repository contains all code used for the Human Lung Cell Atlas project.☆49Updated last year
- Additional code and analysis from the single-cell integration benchmarking project☆59Updated 2 years ago
- Reproducing result from the paper☆33Updated 3 years ago
- Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…☆57Updated 5 months ago
- CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets☆52Updated 5 months ago
- Unsupervised Deep Disentangled Representation of Single-Cell Omics☆39Updated this week
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆52Updated 10 months ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆45Updated 2 years ago
- ☆47Updated last year