Alternatives and similar repositories for maxfuse

Users that are interested in maxfuse are comparing it to the libraries listed below

• drieslab / awesome-spatial-data-analysis
  Awesome list of tools and methods to perform spatial transcriptomic data analysis.
  ☆48Updated 4 years ago
• raphael-group / GASTON
  GASTON: deep learning algorithm learns "topography" of a tissue slice from spatial transcriptomics data
  ☆70Updated 2 months ago
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆102Updated last week
• dpeerlab / ENVI
  ☆52Updated 3 months ago
• emdann / milopy
  Python implementation of Milo for differential abundance testing on KNN graph
  ☆81Updated 11 months ago
• shuxiaoc / mario-py
  MARIO: single-cell proteomic data matching and integration using both shared and distinct features
  ☆22Updated 3 weeks ago
• StatBiomed / SpatialDM
  Spatial direct messaging detected by bivariate Moran
  ☆32Updated 6 months ago
• wanglab-broad / CAST
  CAST package
  ☆42Updated last year
• theislab / multimil
  Weakly supervised learning uncovers phenotypic signatures in single-cell data
  ☆38Updated last month
• raphael-group / paste
  Probabilistic Alignment of Spatial Transcriptomics Experiments
  ☆99Updated 11 months ago
• CSOgroup / cellcharter
  A Python package for the identification, characterization and comparison of spatial clusters from spatial -omics data.
  ☆149Updated 2 weeks ago
• simonwm / tacco
  TACCO: Transfer of Annotations to Cells and their COmbinations
  ☆62Updated 5 months ago
• prabhakarlab / Banksy_py
  BANKSY: Spatial Clustering Algorithm that Unifies Cell-Typing and Tissue Domain Segmentation. Python package for spatial transcriptomics …
  ☆72Updated 2 months ago
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆72Updated 2 years ago
• nolanlab / NeighborhoodCoordination
  Code accompanying our manuscript "Coordinated cellular neighborhoods orchestrate antitumoral immunity at the colorectal cancer invasive f…
  ☆71Updated last year
• KlugerLab / GeneTrajectory
  R implementation of GeneTrajectory
  ☆69Updated last year
• earmingol / cell2cell
  User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins
  ☆69Updated 3 months ago
• Moldia / Xenium_benchmarking
  Code used to benchmark Xenium
  ☆73Updated last year
• livnatje / DIALOGUE
  DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…
  ☆117Updated 2 years ago
• yunguan-wang / SPROD
  SPROD: Spatial expression profiling de-noising
  ☆36Updated 2 years ago
• Banovich-Lab / Spatial_PF
  ☆34Updated 3 months ago
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆100Updated last year
• LungCellAtlas / HLCA_reproducibility
  This repository contains all code used for the Human Lung Cell Atlas project.
  ☆58Updated 2 years ago
• settylab / Mellon
  Non-parametric density inference for single-cell analysis.
  ☆73Updated 8 months ago
• JiangBioLab / DeepCCI
  ☆21Updated 3 years ago
• p-gueguen / Spatial_transcriptomics_tools
  List of Spatial Transcriptomics related Tools organized per category
  ☆102Updated last week
• data2intelligence / SpaCET
  Spatial Cellular Estimator for Tumors
  ☆60Updated last month
• bowang-lab / DeepVelo
  ☆47Updated last year
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆53Updated 9 months ago
• xzhoulab / SPARK
  Spatially resolved transcriptomic analysis
  ☆63Updated 3 years ago