MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
☆20Jun 12, 2024Updated last year
Alternatives and similar repositories for MALDIpy
Users that are interested in MALDIpy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆15Aug 17, 2023Updated 2 years ago
- ☆12Feb 5, 2024Updated 2 years ago
- ☆26Feb 25, 2025Updated last year
- Code for our paper: https://www.biorxiv.org/content/10.1101/528463v1☆18Apr 24, 2020Updated 6 years ago
- ☆19Nov 12, 2025Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Download and Convert METASPACE datasets to common formats such as AnnData or SpatialData☆16Feb 27, 2026Updated 3 months ago
- Framework for analysis of cell-types and Ligand-Receptor cooccurrences☆20Feb 13, 2023Updated 3 years ago
- ☆23Sep 25, 2025Updated 8 months ago
- TSSr is an R/Bioconductor package for comprehensive analyses of transcription start site (TSS) data☆11May 7, 2026Updated last month
- ☆34Apr 8, 2023Updated 3 years ago
- ☆12Apr 9, 2018Updated 8 years ago
- Bring your single-cell data to life☆98May 25, 2026Updated 2 weeks ago
- Learning notes for DBiT-Notes☆11Nov 28, 2024Updated last year
- MassDash: A web-based dashboard for streamlined DIA-MS visualization, analysis, prototyping, and optimization☆22Apr 28, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Read, create and write cutting data for the Leica LMD6 & LMD7 microscope. Build reproducible workflows to calibrate, import SVG files and…☆15Jan 17, 2026Updated 4 months ago
- Python package designed for single-cell calling cards data☆16Jun 8, 2025Updated last year
- Original materials for the "Introduction to Solving Biological Problems with Python" 2 days course☆10Jun 25, 2018Updated 7 years ago
- A community dedicated to education of computer coding applied to mass spectrometry applications.☆52Jul 18, 2025Updated 10 months ago
- R functions underlying ExpressAnalyst☆14May 26, 2026Updated 2 weeks ago
- Python Toolkit for Transcription Factor Activity Inference and Clustering of scRNA-seq Data☆37Dec 15, 2025Updated 5 months ago
- scDoRI (single-cell Deep multi-Omic Regulatory Inference) is a deep learning model to infer enhancer-mediated gene regulatory networks (e…☆32Aug 20, 2025Updated 9 months ago
- ☆19Mar 8, 2023Updated 3 years ago
- ☆25Apr 22, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Computational framework to identify promoter sequences from RNA-seq datasets☆11Sep 27, 2023Updated 2 years ago
- De novo reconstruction of cell interaction landscapes from single-cell spatial transcriptome data☆21Oct 11, 2022Updated 3 years ago
- HMS - Harmful Brain Activity Classification☆13May 8, 2024Updated 2 years ago
- Detection and couting alternative TSS in single cells☆17Apr 21, 2024Updated 2 years ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆99Dec 11, 2023Updated 2 years ago
- ☆12Jun 28, 2024Updated last year
- Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.☆13Jan 27, 2024Updated 2 years ago
- Legend made easy for matplotlib☆36May 6, 2026Updated last month
- 一款聊天工具☆10Sep 22, 2019Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆14Aug 15, 2024Updated last year
- ☆19May 5, 2024Updated 2 years ago
- snakemake workflow for bulk RNA-seq workflow using STAR-edgeR☆13May 21, 2026Updated 2 weeks ago
- Public version of the AIDD consortium code base☆11Mar 25, 2025Updated last year
- Game code of python☆10Jun 24, 2025Updated 11 months ago
- Analyzing cellular niches in spatial transcriptomics data☆36Nov 18, 2024Updated last year
- Identification and targeting of treatment resistant progenitor populations in T-cell Acute Lymphoblastic Leukemia☆15May 16, 2024Updated 2 years ago