Alternatives and similar repositories for BrainAlign

Users that are interested in BrainAlign are comparing it to the libraries listed below

• ZJUFanLab / scNiche
  a computational framework to identify and characterize cell niches from spatial omics data at single-cell resolution
  ☆32Updated last month
• lanagarmire / Asgard
  ☆43Updated last year
• kunwang34 / PhyloVelo
  PhyloVelo, Phylogeny-based transcriptomic velocity of single cells
  ☆43Updated last year
• theislab / scTab
  ☆59Updated 9 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆58Updated last year
• GuangyuWangLab2021 / cellDancer
  Predict RNA velocity through deep learning
  ☆69Updated last year
• kaizhang / single-cell-benchmark
  ☆10Updated last year
• theislab / CellFlow
  Modeling complex perturbations with CellFlow
  ☆57Updated this week
• Roy-lab / scMTNI
  ☆27Updated last week
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆79Updated 6 months ago
• cantinilab / Circe
  Co-accessibility network from single-cell ATAC-seq data. Python code, based on Cicero package (R).
  ☆21Updated this week
• theislab / multimil
  Multimodal weakly supervised learning to identify disease-specific changes in single-cell atlases
  ☆33Updated last week
• devsystemslab / snapseed
  ☆20Updated 2 months ago
• yjgeno / GenKI
  ☆15Updated last year
• bowang-lab / DeepVelo
  ☆47Updated last year
• HelloWorldLTY / UKBioLM
  ☆18Updated 2 months ago
• bm2-lab / STAMP
  ☆10Updated last month
• JiangBioLab / DeepTalk
  Deciphering cell-cell communication from spatially resolved transcriptomic data at single-cell resolution with subgraph-based attentional…
  ☆25Updated 9 months ago
• YangLabHKUST / SpatialScope
  A unified approach for integrating spatial and single-cell transcriptomics data by leveraging deep generative models
  ☆67Updated last year
• theislab / regvelo
  inferring regulatory cellular dynamics
  ☆48Updated last week
• huidongchen / simba
  SIMBA: SIngle-cell eMBedding Along with features
  ☆19Updated last year
• Lotfollahi-lab / nichecompass
  End-to-end analysis of spatial multi-omics data
  ☆78Updated 3 months ago
• TheHumphreysLab / MALDIpy
  MALDIpy: a Python package for single-cell analysis of imaging mass spectrometry data (Cell Metabolism 2024)
  ☆13Updated last year
• zakieh-tayyebi / CellSpace
  Scalable sequence-informed embedding of single-cell ATAC-seq data with CellSpace
  ☆41Updated 5 months ago
• zhanglabtools / CAME
  Cell-type Assignment and Module Extraction based on a heterogeneous graph neural network.
  ☆9Updated last year
• Su-informatics-lab / DSTG
  Deconvoluting Spatial Transcriptomics Data through Graph-based Artificial Intelligence
  ☆39Updated 2 years ago
• multitalk / awesome-cell-cell-communication
  Collection of computational tools for cell-cell communication inference for single-cell and spatially resolved omics
  ☆50Updated 2 weeks ago
• labomics / midas
  ☆56Updated 2 weeks ago
• wallet-maker / cytopus
  Single cell omics biology annotations
  ☆51Updated 2 months ago
• zhanglab-wbgcas / STGRNS
  ☆29Updated 2 years ago