Alternatives and similar repositories for ReferenceEnhancer

Users that are interested in ReferenceEnhancer are comparing it to the libraries listed below

• aertslab / PUMATAC
  Pipeline for Universal Mapping of ATAC-seq
  ☆25Updated last year
• wenweixiong / MARVEL
  ☆51Updated last year
• juliaolivieri / SpliZ_pipeline
  Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis
  ☆34Updated 3 years ago
• aet21 / EpiSCORE
  Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles
  ☆33Updated 5 months ago
• BradBalderson / Cytocipher
  Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…
  ☆38Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated 2 years ago
• dbrg77 / ISSAAC-seq
  ☆17Updated 2 years ago
• GreenleafLab / ChrAccR
  Analyzing chromatin accessibility data in R
  ☆18Updated 2 years ago
• OscarGVelasco / LotOfCells
  R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data
  ☆22Updated last year
• salzman-lab / SICILIAN
  ☆22Updated last year
• immunogenomics / scHLApers
  Code to run the scHLApers pipeline for personalized single-cell HLA quantification
  ☆17Updated last year
• dbrg77 / scATAC_snakemake
  Snakemake pipeline for plate scATAC-seq processing
  ☆26Updated last year
• lusystemsbio / NetAct
  Network construction Algorithm
  ☆22Updated last year
• satijalab / Mixscale
  ☆19Updated 4 months ago
• yizhak-lab-ccg / RNA_MUTECt_WMN
  ☆23Updated 3 years ago
• AdelmanLab / NIH_scripts
  A collection of perl scripts for NGS analysis
  ☆16Updated 11 months ago
• ans4013 / ScisorWiz
  ScisorWiz: Differential Isoform Visualizer for Long-Read RNA Sequencing Data
  ☆17Updated last year
• noush-joglekar / biccn_tilgner_scisorseq
  Code for the BRAIN Initiative Cell Census Network (BICCN) - RF1 Tilgner
  ☆20Updated last year
• ManchesterBioinference / IntegratingATAC-RNA-HiC
  scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper
  ☆24Updated 2 years ago
• ChengLiLab / SCALE
  A tissue-specific single-cell biological age model
  ☆11Updated 2 years ago
• TheJacksonLaboratory / BRCA-LRseq-pipeline
  Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.
  ☆16Updated 3 years ago
• Molecular-Neurogenetics / truster
  https://molecular-neurogenetics.github.io/truster/
  ☆11Updated 2 months ago
• theislab / hadge
  Comprehensive pipeline for donor demultiplexing in single cell
  ☆24Updated last week
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆21Updated last year
• bioinfo-biols / Code_for_circSC
  Analysis pipeline for our circSC manuscript
  ☆13Updated 3 years ago
• Henikoff / scCUT-Tag
  ☆17Updated 2 years ago
• bodegalab / irescue
  Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq
  ☆19Updated this week
• UPSUTER / GEMLI
  ☆32Updated 7 months ago
• aertslab / scATAC-seq_benchmark
  ☆17Updated last year
• Teichlab / snp2cell
  cell type specific, trait-associated gene regulation
  ☆27Updated 5 months ago