cole-trapnell-lab / worm-rnaLinks
The C. elegans transcriptome at single cell resolution
☆11Updated 7 years ago
Alternatives and similar repositories for worm-rna
Users that are interested in worm-rna are comparing it to the libraries listed below
Sorting:
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 months ago
- High-definition modeling of chromatin + transcriptomics data☆24Updated 2 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 9 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- ☆34Updated 6 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 5 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆24Updated 2 years ago
- A method for analyzing scATAC-seq experiments.☆31Updated last week
- ☆39Updated 9 months ago
- ☆35Updated 3 months ago
- RAGE-seq scripts☆18Updated 3 years ago
- <<------ Use SnapATAC!!☆25Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Fast motif matching in R☆47Updated last year
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 5 months ago
- Big data Regression for predicting DNase I hypersensitivity☆30Updated 10 months ago
- A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence☆33Updated last year
- ☆20Updated 6 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆29Updated 5 years ago
- SnapHiC: Single Nucleus Analysis Pipeline for Hi-C Data☆41Updated last year
- Signed LD profile regression code☆17Updated 4 months ago
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- TF analysis from epigenetic and Hi-C data☆17Updated 2 months ago
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆15Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 6 years ago
- Single-cell Scalable Visualization and Analytics☆25Updated 6 years ago
- ☆19Updated 2 years ago
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- A rapid and robust plate-based single cell ATAC-seq (scATAC-seq) method☆43Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago