lamanno-epfl / uMAIAView external linksLinks
Toolbox for the processing and analysis of MALDI-MSI data
☆14Sep 10, 2025Updated 5 months ago
Alternatives and similar repositories for uMAIA
Users that are interested in uMAIA are comparing it to the libraries listed below
Sorting:
- An R package of High-resolution Informatics Toolbox for Maldi-imaging Proteomics☆19Oct 2, 2025Updated 4 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- RECODE - resolution of curse of dimensionality in single-cell data analysis☆22Updated this week
- Reference pipeline for FDR-controlled metabolite annotation for imaging mass spectrometry☆20Nov 15, 2016Updated 9 years ago
- Out-of-core statistical computing and signal processing☆59Sep 22, 2025Updated 4 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆30May 27, 2025Updated 8 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆95Dec 11, 2023Updated 2 years ago
- Latent Embedding Multivariate Regression☆99Nov 21, 2024Updated last year
- This project implenments the OSPF using Dijkstra algorithm (Open Shortest Path First) network protocol in python. Link-State Routing pr…☆12Sep 1, 2017Updated 8 years ago
- ☆12Aug 30, 2025Updated 5 months ago
- Mass spectrometry imaging and complementary techniques open collaboration☆20Dec 17, 2021Updated 4 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- Single-cell genomic sequencing of the human gut microbiome☆12Jun 12, 2024Updated last year
- A unified interface to spatial transcriptomics deconvolution tools☆45Jan 27, 2026Updated 2 weeks ago
- Interfacing R's Spectra package with the Python world.☆13Dec 3, 2025Updated 2 months ago
- Autonomous and accurate clustering of co-localized ion images in a self-supervised manner.☆11Dec 22, 2021Updated 4 years ago
- ☆12Jan 31, 2023Updated 3 years ago
- Enhancer-promoter interaction model☆10Nov 28, 2022Updated 3 years ago
- A Thermo XCalibur Method (.meth) file reader, extracter, and converter command-line program for mass spectrometry researchers.☆12Jan 13, 2019Updated 7 years ago
- general repo that holds all analysis and figures for the thymus spatial atlas by Yayon, Kedlian, Boehme, Radtke and many more!☆12Nov 20, 2024Updated last year
- Bi-order integration (in silico multi-omics data) of single cell RNA sequencing, single cell ATAC sequencing, spacial transcriptomics and…☆39Aug 23, 2023Updated 2 years ago
- The Tomographer package implements the mathematical spatial image reconstruction of any set of read counts as described in the following …☆11May 15, 2021Updated 4 years ago
- A public clone of the HypoMap Figure & analysis repository.☆11Sep 26, 2022Updated 3 years ago
- ☆12May 6, 2024Updated last year
- Scatterbar - data visualization for proportional data across many spatially resolved coordinates☆11Mar 3, 2025Updated 11 months ago
- Draft cell type definitions from data - candidates for inclusion in CL☆12Jul 8, 2025Updated 7 months ago
- ☆12Jul 10, 2022Updated 3 years ago
- Attacking indiscriminately every header, cookie, GET and POST parameter with blind fury.☆13Sep 25, 2025Updated 4 months ago
- Porting of Protein Activity and Pathway Inference to single cell and Python.☆12Feb 1, 2026Updated 2 weeks ago
- Einstein Summation for Arrays in R☆12Aug 31, 2023Updated 2 years ago
- AllenDigger, a tool for spatial expression data visualization, spatial heterogeneity delineation and single cell registration based on Al…☆14Apr 2, 2023Updated 2 years ago
- EuBIC-MS Developers Meeting 2025 on Computational Mass Spectrometry☆11Nov 8, 2024Updated last year
- Code for 'Topological and kernel-based microbial phenotype prediction from MALDI-TOF mass spectra'☆11Apr 11, 2022Updated 3 years ago
- ☆17Jan 20, 2026Updated 3 weeks ago
- ☆10Oct 30, 2024Updated last year
- ESICCC: A systematic computational framework for evaluation, selection and integration of cell-cell communication inference methods☆12Jan 10, 2024Updated 2 years ago
- Statistical analysis for spatial omics data☆11Jul 30, 2022Updated 3 years ago
- Materials for the INF 515: Comparative Genomics course at NAU taught by Prof. Marc Tollis☆13Apr 3, 2025Updated 10 months ago
- ☆12Nov 16, 2021Updated 4 years ago