rnakato / ShortCake
A docker image for single-cell analysis
☆86Updated 3 months ago
Alternatives and similar repositories for ShortCake:
Users that are interested in ShortCake are comparing it to the libraries listed below
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆92Updated 2 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆84Updated 10 months ago
- R package for Pathway RespOnsive GENe activity inference☆104Updated 2 years ago
- ☆62Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆90Updated 2 years ago
- R package to access DoRothEA's regulons☆144Updated last year
- Direct estimation of mean and covariance from single cell RNA seq experiments☆106Updated 3 months ago
- Tools for single-cell data processing☆124Updated 11 months ago
- R implementation of MULTI-seq sample classification workflow☆62Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆110Updated last week
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated 2 years ago
- Detect doublets in single-cell RNA-seq data☆38Updated 5 years ago
- Single-Cell Clustering Assessment Framework☆101Updated last year
- trajectory inference☆97Updated 3 months ago
- Detect doublets in single-cell RNA-seq data☆85Updated 5 years ago
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 5 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆73Updated last month
- ☆57Updated 4 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆158Updated last month
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆102Updated last week
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- R package that automatically classifies the cells in the scRNA data by segregating non-malignant cells of tumor microenviroment from the …☆103Updated last month
- ☆79Updated last year
- ☆105Updated last month
- Efficient and precise single-cell reference atlas mapping with Symphony☆104Updated 2 years ago
- Framework for sensitive DE testing (using neighbourhoods)☆66Updated 9 months ago
- A tool for unsupervised projection of single cell RNA-seq data☆95Updated 4 years ago
- Significance analysis for clustering single-cell RNA-sequencing data☆115Updated 7 months ago