rnakato / ShortCake
A docker image for single-cell analysis
☆81Updated 2 weeks ago
Alternatives and similar repositories for ShortCake:
Users that are interested in ShortCake are comparing it to the libraries listed below
- ☆60Updated last year
- R implementation of MULTI-seq sample classification workflow☆61Updated last year
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆83Updated 7 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆96Updated 2 weeks ago
- Data and analysis scripts for our Embryo Timecourse paper.☆67Updated 5 years ago
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆89Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆103Updated 2 weeks ago
- ☆60Updated 4 years ago
- ☆69Updated last week
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆94Updated last year
- R package for Pathway RespOnsive GENe activity inference☆99Updated 2 years ago
- A tool for semi-automatic cell type harmonization and integration☆102Updated last year
- ☆102Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆87Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆50Updated this week
- Tools for single-cell data processing☆122Updated 8 months ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆59Updated last month
- ☆57Updated 4 years ago
- SEACells algorithm for Inference of transcriptional and epigenomic cellular states from single-cell genomics data☆154Updated 7 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆92Updated 4 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆112Updated this week
- Pipeline for exploring metebolic heterogeneity at single-cell resolution☆74Updated 5 years ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆55Updated last year
- ☆67Updated 10 months ago
- User-friendly tool to infer cell-cell interactions and communication from gene expression of interacting proteins☆59Updated 8 months ago
- trajectory inference☆95Updated 3 weeks ago
- Coarse-graining of large single-cell RNA-seq data into metacells☆72Updated 5 months ago
- Spatial transcriptomics of heart tissue☆80Updated last year
- single cell Flux Estimation Analysis (scFEA) Try the below web server!☆113Updated last year
- Clonotype Neighbor Graph Analysis☆83Updated 5 months ago