rnakato / ShortCakeLinks
A docker image for single-cell analysis
☆103Updated 3 months ago
Alternatives and similar repositories for ShortCake
Users that are interested in ShortCake are comparing it to the libraries listed below
Sorting:
- R package for Pathway RespOnsive GENe activity inference☆114Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆123Updated this week
- R package to access DoRothEA's regulons☆154Updated last year
- SCSA: cell type annotation for single-cell RNA-seq data☆94Updated 2 years ago
- Tools for single-cell data processing☆131Updated last year
- ☆90Updated 5 months ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆104Updated last month
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆127Updated 8 months ago
- trajectory inference☆105Updated last year
- ☆74Updated 2 years ago
- Single-Cell Clustering Assessment Framework☆107Updated 2 years ago
- ☆71Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆75Updated 7 months ago
- Publication Page for Satpathy*, Granja* et al 2019☆94Updated 5 years ago
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆119Updated 3 years ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆84Updated 10 months ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆161Updated last week
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆99Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆80Updated 2 years ago
- A tool that allows to get UMI counts from a single cell protein assay☆87Updated 9 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆68Updated 6 years ago
- Tutorial of single-cell RNA-ATAC multiomic sequencing data analysis☆69Updated last year
- ST Pipeline contains the tools and scripts needed to process and analyze the raw files generated with the Spatial Transcriptomics method …☆84Updated 4 years ago
- Cluster single cells and analyze cell clade relationships with colorful visualizations.☆114Updated last year
- Context specific and dynamic gene regulatory network reconstruction and analysis☆126Updated 2 months ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆81Updated last year
- ☆120Updated 5 months ago
- Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.☆95Updated 2 years ago