rnakato / ShortCakeLinks
A docker image for single-cell analysis
☆89Updated 7 months ago
Alternatives and similar repositories for ShortCake
Users that are interested in ShortCake are comparing it to the libraries listed below
Sorting:
- R package for Pathway RespOnsive GENe activity inference☆108Updated 2 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆91Updated 2 years ago
- R package to access DoRothEA's regulons☆150Updated last year
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' data☆118Updated last week
- Tools for single-cell data processing☆126Updated last year
- Accompanying code for the tutorial: Annotating single cell transcriptomic maps using automated and manual methods☆97Updated 2 years ago
- ☆71Updated 2 years ago
- ☆62Updated 5 years ago
- Collection of Tumor-Infiltrating Lymphocyte Single-Cell Experiments with TCR☆92Updated last week
- trajectory inference☆104Updated 7 months ago
- ☆70Updated last year
- marker-based purification of cell types from single-cell RNA-seq datasets☆121Updated last month
- ☆86Updated 2 weeks ago
- Direct estimation of mean and covariance from single cell RNA seq experiments☆116Updated 4 months ago
- Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey a…☆157Updated last week
- kallisto | bustools workflow for pre-processing single-cell RNA-seq data☆118Updated 3 years ago
- R implementation of MULTI-seq sample classification workflow☆64Updated last year
- wrapper scripts for convenient STARsolo processing of 10X and other scRNA-seq☆64Updated 3 months ago
- Efficient and precise single-cell reference atlas mapping with Symphony☆108Updated 2 years ago
- A Shiny web app for mapping datasets using Seurat v4☆132Updated 10 months ago
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- A repository of pipelines for single-cell data in Nextflow DSL2☆75Updated 2 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆85Updated last year
- SingleCellNet: classify single cells across species and platforms☆138Updated 2 years ago
- Clonotype Neighbor Graph Analysis☆90Updated 3 weeks ago
- Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.☆79Updated 5 months ago
- A tool that allows to get UMI counts from a single cell protein assay☆82Updated 4 months ago
- Data and analysis scripts for our Embryo Timecourse paper.☆69Updated 5 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆122Updated last week
- AUCell: score single cells with gene regulatory networks☆166Updated last year