A unified interface to spatial transcriptomics deconvolution tools
☆56Aug 3, 2026Updated last week
Alternatives and similar repositories for spacedeconv
Users that are interested in spacedeconv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unified access to several second-generation deconvolution methods☆110Aug 3, 2026Updated last week
- Simulate pseudo-bulk RNAseq samples from scRNAseq expression data☆19Aug 3, 2026Updated last week
- ☆15Aug 17, 2023Updated 2 years ago
- scFOCAL operates through the integration of drug-response transcriptional consensus signatures (TCSs) derived from the LINCS L1000 datase…☆25Jun 23, 2026Updated last month
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆16Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation dataset…☆11Dec 12, 2022Updated 3 years ago
- a deep generative model for single-cell survival analysis☆26Dec 2, 2025Updated 8 months ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆548Aug 3, 2026Updated last week
- A Toolbox for Spatial Transcriptomics Analysis☆171May 6, 2025Updated last year
- supplementary tables and files☆11Oct 13, 2023Updated 2 years ago
- Prostate Cancer Alteration Signature Analysis https://xsliulab.github.io/PC_CNA_signature/☆13May 17, 2021Updated 5 years ago
- R package to infer biological activities from omics data using a collection of methods.☆303Dec 16, 2025Updated 7 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆195Aug 12, 2025Updated last year
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆54Mar 7, 2023Updated 3 years ago
- Construct Tumor Transition Zone Microenvironment☆61Jun 25, 2025Updated last year
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆53Mar 24, 2026Updated 4 months ago
- ☆20Updated this week
- R client for the OmniPath web service☆171Aug 3, 2026Updated last week
- ☆14Jun 10, 2025Updated last year
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- AnnData interoperability in R☆194Updated this week
- Multi-agent LLM driven cell type annotation for single-cell RNA-Seq data☆40Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆22Mar 6, 2023Updated 3 years ago
- Pan-Cancer Single Cell Classifier☆87May 30, 2024Updated 2 years ago
- BioCarta pathway images☆11Jan 30, 2026Updated 6 months ago
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated last year
- Ensemble Learning for Harmonization and Annotation of Single Cells (ELeFHAnt) provides an easy to use R package for users to annotate clu…☆24Jul 18, 2022Updated 4 years ago
- Meta-analysis of drug target evidence in single-cell data☆17Oct 22, 2024Updated last year
- An eXplainable Cell-specific machine learning method to predict clinical Phenotypes using single-cell multi-omics☆17Sep 23, 2025Updated 10 months ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 9 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison☆19Aug 4, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Gene group activity utility functions for Scanpy☆115Dec 21, 2024Updated last year
- Extension of SpatialExperiment with sf☆57May 6, 2026Updated 3 months ago
- ☆13Jun 18, 2026Updated last month
- Gene set scoring for single-cell data☆203Apr 29, 2026Updated 3 months ago
- A modern Python library for converting Mass Spectrometry Imaging (MSI) data into standardized SpatialData/Zarr format, enabling seamless …☆22Aug 3, 2026Updated last week
- mesa package for Methylation Enrichment Sequencing Analysis☆16Jul 28, 2026Updated 2 weeks ago
- Deciphering spatial ecotypes from spatial, single-cell, and bulk transcriptomic data☆42Jul 30, 2026Updated last week