Alternatives and similar repositories for spacedeconv

Users that are interested in spacedeconv are comparing it to the libraries listed below

• JinmiaoChenLab / ezSingleCell2
  ☆57Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆89Updated 4 months ago
• ZJUFanLab / CellTalkDB
  A manually curated database of literature-supported ligand-receptor interactions in human and mouse
  ☆30Updated last year
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆79Updated 2 weeks ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated 3 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆82Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆65Updated 11 months ago
• JEFworks-Lab / CRAWDAD
  Cell-type Relationship Analysis Workflow Done Across Distances
  ☆38Updated 4 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆75Updated last year
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆76Updated 2 months ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆41Updated 3 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆64Updated 3 years ago
• KChen-lab / METAFlux
  ☆76Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 2 years ago
• alserglab / mascarade
  Generate masks for scRNA-seq clusters on t-SNE or UMAP plots
  ☆33Updated 5 months ago
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆90Updated 2 months ago
• xleizi / easySCF
  ☆45Updated last week
• Winnie09 / Lamian
  ☆58Updated last month
• Teichlab / drug2cell
  Gene group activity utility functions for Scanpy
  ☆93Updated 10 months ago
• phillipnicol / scDist
  Robust identification of perturbed cell types in single-cell RNA-seq data
  ☆34Updated 11 months ago
• Nanostring-Biostats / SpatialDecon
  The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…
  ☆41Updated 5 months ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆43Updated last year
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• BostonGene / Kassandra
  Bostongene cell deconvolution algorithm from RNAseq
  ☆57Updated last year
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• Janezjz / cellanova
  CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration
  ☆51Updated 11 months ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆39Updated 3 years ago
• cnio-bu / beyondcell
  Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …
  ☆54Updated last year
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆129Updated 3 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago