omnideconv / spacedeconvLinks
A unified interface to spatial transcriptomics deconvolution tools
☆45Updated 2 weeks ago
Alternatives and similar repositories for spacedeconv
Users that are interested in spacedeconv are comparing it to the libraries listed below
Sorting:
- Gene regulatory network containing signed transcription factor-target gene interactions☆98Updated 8 months ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆32Updated last year
- Unified access to several second-generation deconvolution methods☆91Updated last month
- Coarse-graining of large single-cell RNA-seq data into metacells☆92Updated this week
- ☆57Updated 2 years ago
- Pan-Cancer Single Cell Classifier☆83Updated last year
- Code repository for the Tumor Immune Cell Atlas (TICA) project☆63Updated 3 years ago
- R package for pathway analysis in scRNA-seq data☆77Updated last year
- Aligning gene expression trajectories of single-cell reference and query systems☆81Updated 6 months ago
- scGSVA: Perform GSVA for single cell RNA seq☆70Updated last week
- Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection☆41Updated 4 years ago
- ☆41Updated 4 years ago
- ☆85Updated last year
- Generate masks for scRNA-seq clusters on t-SNE or UMAP plots☆45Updated 2 weeks ago
- CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration☆54Updated last year
- scWGCNA☆61Updated 3 years ago
- Gene group activity utility functions for Scanpy☆100Updated last year
- A R package for advanced single cell data viz☆73Updated 5 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆138Updated 6 months ago
- Beyondcell is a computational methodology for identifying tumour cell subpopulations with distinct drug responses in single-cell RNA-seq …☆57Updated last year
- The SpatialDecon library implements the SpatialDecon algorithm for mixed cell deconvolution in spatial gene expression datasets. (This al…☆41Updated last week
- R Package for Single-Cell Dataset Processing and Visualization☆66Updated 4 years ago
- ☆65Updated 6 years ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆46Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- An R shiny based tool used for single cell RNA-seq data visualization and analysis.☆34Updated 5 years ago
- An R package for handling and analysing imaging mass cytometry data☆30Updated last month
- A tool for removing doublets from single-cell RNA-seq data☆75Updated 5 years ago
- ☆48Updated 3 months ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated 2 years ago