A unified interface to spatial transcriptomics deconvolution tools
☆45Feb 15, 2026Updated last month
Alternatives and similar repositories for spacedeconv
Users that are interested in spacedeconv are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Unified access to several second-generation deconvolution methods☆96Jan 5, 2026Updated 2 months ago
- ☆15Aug 17, 2023Updated 2 years ago
- spSeudoMap: cell type mapping of spatial transcriptomics using unmatched single-cell RNA-seq data☆13Sep 29, 2024Updated last year
- a deep generative model for single-cell survival analysis☆16Dec 2, 2025Updated 3 months ago
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆183Aug 12, 2025Updated 7 months ago
- SEQUOIA: Digital profiling of cancer transcriptomes with grouped vision attention☆49Jun 4, 2025Updated 9 months ago
- A package that performs cell type annotations on single cell resolution of spatial transcriptomics data, find the niche interactions and …☆14Dec 5, 2025Updated 3 months ago
- A Toolbox for Spatial Transcriptomics Analysis☆166May 6, 2025Updated 10 months ago
- ☆54Mar 7, 2023Updated 3 years ago
- A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution method…☆529Jan 5, 2026Updated 2 months ago
- BioCarta pathway images☆11Jan 30, 2026Updated last month
- Spatial Experiments raster - a rasterization preprocessing framework for scalable spatial omics data analysis☆19Apr 23, 2025Updated 11 months ago
- ☆22Mar 6, 2023Updated 3 years ago
- ☆14Jun 10, 2025Updated 9 months ago
- Meta-analysis of drug target evidence in single-cell data☆16Oct 22, 2024Updated last year
- ☆13Sep 29, 2023Updated 2 years ago
- R package to infer biological activities from omics data using a collection of methods.☆286Dec 16, 2025Updated 3 months ago
- Difference in Intercellular Communication from scRNA-seq data☆25Oct 14, 2025Updated 5 months ago
- A end-to-end scRNA-seq analysis pipeline for cross-group comparison