A dataset for training and benchmarking deep learning models for RNA structure prediction
☆64Apr 3, 2026Updated last week
Alternatives and similar repositories for rna3db
Users that are interested in rna3db are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Accelerate Molecular Biology Research with Machine Learning☆50Mar 29, 2026Updated 2 weeks ago
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆22Mar 26, 2026Updated 2 weeks ago
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- ☆38Dec 15, 2023Updated 2 years ago
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆26Dec 3, 2024Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆293Dec 16, 2025Updated 3 months ago
- RiboNucleic Acid (RNA) Language Model☆160Oct 3, 2025Updated 6 months ago
- ☆37Jan 14, 2025Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Apr 8, 2026Updated last week
- ☆20Oct 18, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆21Jul 21, 2023Updated 2 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- ☆20Jul 16, 2024Updated last year
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated last month
- Nature Methods: RNA foundation model (together with RhoFold)☆362May 27, 2025Updated 10 months ago
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated last year
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated last year
- Toolkit for structure-based deep learning on RNA.☆46Feb 9, 2026Updated 2 months ago
- ☆43Oct 1, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- init commit☆15Oct 31, 2023Updated 2 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆26Updated this week
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated 11 months ago
- Code repository of "Deep generative design of RNA family sequences"☆40Apr 8, 2026Updated last week
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 9 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- ☆18Jun 22, 2024Updated last year
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated 2 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆224May 29, 2025Updated 10 months ago
- Scalable Deep Learning for RNA Secondary Structure Prediction☆42Sep 23, 2025Updated 6 months ago
- ARES implement in PyTorch☆16Feb 27, 2024Updated 2 years ago
- Differentiable RNA folding in JAX☆27Mar 25, 2025Updated last year