A dataset for training and benchmarking deep learning models for RNA structure prediction
☆63Feb 12, 2026Updated 3 weeks ago
Alternatives and similar repositories for rna3db
Users that are interested in rna3db are comparing it to the libraries listed below
Sorting:
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆22Updated this week
- ☆38Dec 15, 2023Updated 2 years ago
- Accelerate Molecular Biology Research with Machine Learning☆50Updated this week
- to assess structural quality of RNA using 3D CNN☆13Aug 17, 2018Updated 7 years ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- RNA Multiple Sequence Alignment☆48Jul 20, 2023Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆25Dec 3, 2024Updated last year
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆290Dec 16, 2025Updated 2 months ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Feb 25, 2026Updated last week
- ☆36Jan 14, 2025Updated last year
- Toolkit for structure-based deep learning on RNA.☆44Feb 9, 2026Updated 3 weeks ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆24Jun 10, 2025Updated 8 months ago
- RiboNucleic Acid (RNA) Language Model☆157Oct 3, 2025Updated 5 months ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆354May 27, 2025Updated 9 months ago
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated 10 months ago
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- ☆17Jul 21, 2023Updated 2 years ago
- Generative diverse protein backbones by protein language model☆34Updated this week
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Jun 3, 2024Updated last year
- ☆20Jul 16, 2024Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆34May 24, 2024Updated last year
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- ☆41Oct 1, 2023Updated 2 years ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated last month
- Differentiable RNA folding in JAX☆27Mar 25, 2025Updated 11 months ago
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆57Dec 16, 2025Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- Draw RNA secondary structures in python.☆49Jun 24, 2025Updated 8 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆217May 29, 2025Updated 9 months ago
- ☆35Jun 17, 2025Updated 8 months ago
- ☆19Oct 18, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆40Nov 10, 2025Updated 3 months ago