Alternatives and similar repositories for SwitchFinder

Users that are interested in SwitchFinder are comparing it to the libraries listed below

• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 6 months ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆23Updated 2 weeks ago
• mhorlacher / rbpnet
  ☆18Updated last year
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆10Updated 5 years ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆13Updated 5 months ago
• xiongxslab / Translatomer
  ☆22Updated 5 months ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 2 years ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆15Updated 7 years ago
• PennHui2016 / OpDEA
  A toolkit for optimal workflow recommendation for proteomics data differential expression analysis
  ☆16Updated 9 months ago
• bassanilab / NeoDisc
  NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…
  ☆12Updated 9 months ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆23Updated 2 months ago
• GuoBioinfoLab / TCRdb
  A database of T-cell receptor sequences
  ☆10Updated this week
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 4 months ago
• kundajelab / bpnet-manuscript
  BPNet manuscript code.
  ☆12Updated 4 years ago
• ekernf01 / perturbation_benchmarking
  Comparing performance across many methodological dimensions among tools that predict RNA after TF knockdowns and overexpression.
  ☆19Updated 4 months ago
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆25Updated 11 months ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆27Updated 2 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆34Updated 4 months ago
• jzhoulab / puffin_manuscript
  ☆17Updated 9 months ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated last month
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆28Updated 3 months ago
• matsengrp / phippery
  ☆19Updated 8 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆17Updated 2 years ago
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆13Updated 5 months ago
• ggdna / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated 9 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆64Updated 2 years ago
• klarman-cell-observatory / Riboseq-nuORFs
  ☆11Updated 5 years ago
• IxI-97 / BiomiX
  R tool to analyse and integrate multiple -omics data
  ☆13Updated 2 months ago