☆21Jul 16, 2024Updated 2 years ago
Alternatives and similar repositories for SwitchFinder
Users that are interested in SwitchFinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python implementation of TEISER also capable of using SHAPE structural probing data☆12Jan 7, 2025Updated last year
- Integrative Python library for RNA Secondary Structure Analysis☆20Mar 26, 2025Updated last year
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Jul 1, 2026Updated 3 weeks ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- python implementation of the PAGE algorithm☆24Feb 15, 2026Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- rnalib: a python-based transcriptomics library☆13Jan 23, 2026Updated 6 months ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- Single Cell RNA PolyA Site Discovery☆11Updated this week
- StructureFold2☆12Jun 25, 2022Updated 4 years ago
- SHAPE-guided RNA structural homology search☆12Aug 12, 2025Updated 11 months ago
- Code to build models that effectively predict promoter-driven gene expression☆12May 15, 2025Updated last year
- Analyse RNA feature distributions.☆20Dec 16, 2024Updated last year
- Bayesian modelling approach for detecting RNA flexibility changes in high-throughput structure probing data under different conditions, b…☆11Dec 8, 2022Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆18Oct 22, 2024Updated last year
- Deconvolution of RNA Alternative COnformations☆15Jun 24, 2026Updated last month
- ☆19Oct 18, 2024Updated last year
- a variational autoencoder method for clustering single-cell mutation data☆11Apr 17, 2024Updated 2 years ago
- Interpretable bimodal network for transcription factors binding site prediction☆10Jun 29, 2023Updated 3 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆24Updated this week
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- Semiautomated layout of RNA tertiary structure diagrams☆16Feb 26, 2025Updated last year
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Feb 7, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- R package for generalized binary covariance decomposition.☆16Jul 13, 2025Updated last year
- The analysis pipeline for FLEP-seq☆17Aug 18, 2023Updated 2 years ago
- 🧪 Optimized protocol for m6A-SAC-seq☆13Jun 16, 2025Updated last year
- scover☆23Nov 3, 2023Updated 2 years ago
- The million-scale method for single-cell analysis☆10Jul 6, 2023Updated 3 years ago
- Interpretable splicing model☆23Jun 14, 2023Updated 3 years ago
- Transposable element expression at unique loci in single cells with CELLO-seq☆12Jun 17, 2024Updated 2 years ago
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- An R package to implement Differential Gene Set Enrichment Analysis (DGSEA): A statistical approach to quantify the relative enrichment o…☆15Apr 12, 2023Updated 3 years ago
- ☆17Sep 16, 2024Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Nov 11, 2022Updated 3 years ago
- ☆19Updated this week
- Predicting TF sequence-specificity similarity with weighted alignments☆13Oct 7, 2019Updated 6 years ago
- ☆14Sep 1, 2024Updated last year
- ☆17Apr 9, 2021Updated 5 years ago