goodarzilab / SwitchFinderLinks
☆18Updated last year
Alternatives and similar repositories for SwitchFinder
Users that are interested in SwitchFinder are comparing it to the libraries listed below
Sorting:
- ☆18Updated last year
- ☆24Updated last week
- Scripts for building computational models of gene regulation with tensorflow☆11Updated 5 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- Multi-Omics Peptide Generator☆26Updated 3 weeks ago
- python based queries for the proteomesoflife neo4j network database☆14Updated 5 years ago
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆35Updated 5 months ago
- Genomic sequence preprocessing toolkit☆12Updated 3 weeks ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆13Updated 7 months ago
- SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.☆12Updated 2 years ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆17Updated 11 months ago
- ☆19Updated 10 months ago
- Chromatin interaction aware gene regulatory modeling with graph attention networks☆27Updated 2 years ago
- Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"☆15Updated 7 years ago
- Saluki, a method to predict mRNA half-lives from sequence☆25Updated 2 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆26Updated 3 years ago
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆28Updated 7 years ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆30Updated 7 months ago
- rnalib: a python-based transcriptomics library☆11Updated 3 months ago
- python implementation of the PAGE algorithm☆18Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 10 months ago
- ☆17Updated 10 months ago
- ExplaiNN: interpretable and transparent neural networks for genomics☆49Updated 5 months ago
- R tool to analyse and integrate multiple -omics data☆13Updated 3 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- Species-aware DNA language models capture regulatory elements and their evolution☆24Updated 2 years ago
- Feature-rich Python implementation of the tximport package for gene count estimation.☆37Updated this week
- ☆16Updated last year
- ☆11Updated 5 years ago