Alternatives and similar repositories for SwitchFinder

Users that are interested in SwitchFinder are comparing it to the libraries listed below

• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 11 months ago
• mhorlacher / rbpnet
  ☆18Updated last year
• xiongxslab / Translatomer
  ☆24Updated 3 months ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆30Updated last month
• popitsch / rnalib
  rnalib: a python-based transcriptomics library
  ☆11Updated last month
• Carldeboer / CisRegModels
  Scripts for building computational models of gene regulation with tensorflow
  ☆11Updated 5 years ago
• julianeweller / MinsePIE
  Modelling insertion efficiency for Prime Insertion Experiments
  ☆13Updated last year
• Genentech / polygraph
  Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …
  ☆38Updated 9 months ago
• ggdna / seqwalk
  Efficient algorithms for designing orthogonal DNA sequence libraries
  ☆13Updated last year
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 8 months ago
• cyang235 / LncADeep
  LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
  ☆29Updated 7 years ago
• Pandaman-Ryan / AgentBind
  ☆14Updated last year
• matsengrp / phippery
  ☆18Updated last year
• Xinglab / IRIS
  IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening
  ☆27Updated last year
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆16Updated 8 years ago
• emmijokinen / TCRconv
  TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…
  ☆25Updated 3 years ago
• karbalayghareh / GraphReg
  Chromatin interaction aware gene regulatory modeling with graph attention networks
  ☆28Updated 2 years ago
• matsengrp / phip-flow
  A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets
  ☆12Updated 10 months ago
• bendemeo / hopper
  Diverse sampling for single-cell datasets
  ☆16Updated 5 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 3 years ago
• marcottelab / protein_complex_maps
  Kdrew's scripts for handling protein complex map data
  ☆14Updated 6 months ago
• bassanilab / NeoDisc
  NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…
  ☆13Updated last year
• FunctionLab / sei-manuscript
  Code for reproducing the Sei manuscript results
  ☆17Updated 3 years ago
• JSB-UCLA / Clipper
  A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions
  ☆41Updated 3 years ago
• vrmelo / SPLICE-q
  SPLICE-q -- A Python tool for genome-wide SPLIcing Efficiency quantification from RNA-seq data.
  ☆12Updated 2 years ago
• y9c / m6A-SACseq
  🧪 Optimized protocol for m6A-SAC-seq
  ☆11Updated 6 months ago
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• jzhoulab / puffin_manuscript
  ☆18Updated last year
• gagneurlab / SpeciesLM
  Species-aware DNA language models capture regulatory elements and their evolution
  ☆27Updated 2 years ago
• lareaulab / psix
  ☆16Updated last year