Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
☆227May 29, 2025Updated 11 months ago
Alternatives and similar repositories for RhoFold
Users that are interested in RhoFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆51Oct 31, 2025Updated 6 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆367May 27, 2025Updated 11 months ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆62Nov 8, 2024Updated last year
- RiboNucleic Acid (RNA) Language Model☆161Oct 3, 2025Updated 7 months ago
- ☆43Oct 1, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆297Dec 16, 2025Updated 4 months ago
- ☆46Jan 28, 2026Updated 3 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆54Nov 17, 2024Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆84Aug 11, 2024Updated last year
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- ☆22Jul 21, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated last month
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆67Jul 17, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated 2 years ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,853Apr 23, 2026Updated last week
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆98Oct 15, 2025Updated 6 months ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆17May 6, 2025Updated 11 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆380Jun 3, 2024Updated last year
- ☆94Oct 9, 2024Updated last year
- Toolkit for structure-based deep learning on RNA.☆46Apr 15, 2026Updated 2 weeks ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆107Nov 20, 2025Updated 5 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆56Jan 12, 2026Updated 3 months ago
- ☆20Oct 18, 2024Updated last year
- ARES implement in PyTorch☆16Feb 27, 2024Updated 2 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆179Mar 29, 2026Updated last month
- ☆37Jan 14, 2025Updated last year
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 3 years ago
- Source code for "A universal framework for accurate and efficient geometric deep learning of molecular systems" (Nature Scientific Report…☆72Nov 12, 2025Updated 5 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Resources for the BioML Challenge 2024: Bits to Binders☆19Aug 24, 2024Updated last year
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- ☆137Jun 3, 2025Updated 11 months ago
- ☆16Dec 18, 2024Updated last year
- Protein language model trained on coding DNA☆54Oct 20, 2024Updated last year
- Biological foundation modeling from molecular to genome scale☆1,505Mar 20, 2026Updated last month
- Program to find drug-like RNA-ligand binding pockets.☆24Mar 19, 2026Updated last month