Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach
☆217May 29, 2025Updated 9 months ago
Alternatives and similar repositories for RhoFold
Users that are interested in RhoFold are comparing it to the libraries listed below
Sorting:
- Nature Methods: RNA foundation model (together with RhoFold)☆354May 27, 2025Updated 9 months ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆50Oct 31, 2025Updated 4 months ago
- RiboNucleic Acid (RNA) Language Model☆157Oct 3, 2025Updated 5 months ago
- ☆51Nov 14, 2025Updated 3 months ago
- ☆42Jan 28, 2026Updated last month
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆287Dec 16, 2025Updated 2 months ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆52Nov 17, 2024Updated last year
- ☆41Oct 1, 2023Updated 2 years ago
- Nature Computational Science: RhoDesign is a structure-to-sequence model for RNA design.☆55Nov 8, 2024Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆82Aug 11, 2024Updated last year
- ☆17Jul 21, 2023Updated 2 years ago
- RNA Multiple Sequence Alignment☆48Jul 20, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆63Feb 12, 2026Updated 2 weeks ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆66Jul 17, 2024Updated last year
- Toolkit for structure-based deep learning on RNA.☆44Feb 9, 2026Updated 3 weeks ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆93Oct 15, 2025Updated 4 months ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆25Dec 3, 2024Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆375Jun 3, 2024Updated last year
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆174Feb 4, 2026Updated last month
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆107Nov 20, 2025Updated 3 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆184Updated this week
- ☆36Jan 14, 2025Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆16May 6, 2025Updated 9 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,668Feb 25, 2026Updated last week
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆122Apr 7, 2024Updated last year
- Source code for "A universal framework for accurate and efficient geometric deep learning of molecular systems" (Nature Scientific Report…☆72Nov 12, 2025Updated 3 months ago
- ☆96Oct 9, 2024Updated last year
- RiboNN: predicting translation efficiencies from mRNA sequences☆53Jan 12, 2026Updated last month
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆17Jun 10, 2022Updated 3 years ago
- Resources for the BioML Challenge 2024: Bits to Binders☆18Aug 24, 2024Updated last year
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆69Jul 22, 2024Updated last year
- SE(3) diffusion models for generating CDR loops☆10Feb 6, 2024Updated 2 years ago
- ☆19Oct 18, 2024Updated last year
- ARES implement in PyTorch☆15Feb 27, 2024Updated 2 years ago
- Draw RNA secondary structures in python.☆49Jun 24, 2025Updated 8 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 3 months ago
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆3,986Feb 7, 2024Updated 2 years ago