Alternatives and similar repositories for rnaglib

Users that are interested in rnaglib are comparing it to the libraries listed below

• NasimAbdollahi / NodeCoder
  NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.
  ☆33Updated last year
• BioinfoMachineLearning / DIPS-Plus
  The Enhanced Database of Interacting Protein Structures for Interface Prediction
  ☆49Updated last year
• Profluent-Internships / MMDiff
  Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion
  ☆58Updated last year
• phermosilla / IEConv_proteins
  Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures
  ☆48Updated 3 years ago
• BioinfoMachineLearning / EnQA
  A 3D-equivariant neural network for protein structure accuracy estimation
  ☆18Updated 2 years ago
• kiharalab / GNN_DOVE
  Code for "Protein Docking Model Evaluation by Graph Neural Networks"
  ☆59Updated 2 years ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆62Updated 2 months ago
• Minys233 / Dynaformer
  ☆30Updated last year
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• feiglab / idpgan
  ☆48Updated 7 months ago
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆45Updated 6 months ago
• lujiarui / esmdiff
  Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)
  ☆59Updated 5 months ago
• IBM / ReprogBERT
  Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"
  ☆24Updated 2 years ago
• ml4bio / RiboDiffusion
  ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models
  ☆51Updated 8 months ago
• KrishnaswamyLab / ProtSCAPE
  ☆19Updated 10 months ago
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆58Updated last year
• Dunni3 / keypoint-diffusion
  A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.
  ☆29Updated last year
• zaixizhang / FAIR
  NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement
  ☆47Updated last year
• EureKaZhu / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆36Updated last year
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆56Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated 9 months ago
• pylelab / Arena
  ☆17Updated 2 years ago
• smiles724 / PeptideDesign
  ☆29Updated last month
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆26Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆65Updated last year
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆65Updated 11 months ago
• KoubaPetr / Flexpert
  Code for the paper "Learning to engineer protein flexibility".
  ☆19Updated last month
• a-r-j / CPDB
  Cython implementation of PDB -> DataFrame parsing
  ☆23Updated 2 years ago
• vsomnath / holoprot
  Multi-Scale Representation Learning on Proteins (NeurIPS 2021)
  ☆46Updated 2 years ago
• automl / RNAformer
  Scalable Deep Learning for RNA Secondary Structure Prediction
  ☆37Updated last year