cgoliver / rnaglibLinks
Deep learning datasets for RNA 3D and 2.5D structures.
☆40Updated this week
Alternatives and similar repositories for rnaglib
Users that are interested in rnaglib are comparing it to the libraries listed below
Sorting:
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆49Updated last year
- Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures☆48Updated 3 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆61Updated last month
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- Code for "Protein Docking Model Evaluation by Graph Neural Networks"☆59Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆48Updated last year
- NodeCoder is a general framework based on graph convolutional neural network for protein function prediction.☆33Updated last year
- ☆19Updated 9 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- ☆31Updated last year
- A 3D-equivariant neural network for protein structure accuracy estimation☆18Updated 2 years ago
- RXN for biochemical reactions☆69Updated 2 years ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆50Updated 8 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆27Updated 9 months ago
- Database of Interacting Protein Structures (DIPS)☆102Updated last year
- Protein structure datasets for machine learning.☆111Updated 2 months ago
- Cython implementation of PDB -> DataFrame parsing☆23Updated 2 years ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆52Updated 6 months ago
- A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.☆29Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆113Updated 4 months ago
- Dataset and package for working with protein-protein interactions in 3D☆94Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- ☆58Updated 8 months ago
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- Official repository of ReactZyme☆34Updated 9 months ago
- [ICLR 2023] "HotProtein: A Novel Framework for Protein Thermostability Prediction and Editing" by Tianlong Chen*, Chengyue Gong*, Daniel …☆31Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year