List of papers on protein binding site prediction
☆11Aug 11, 2023Updated 3 years ago
Alternatives and similar repositories for Awesome-List-Protein-Binding-Site-Prediction-
Users that are interested in Awesome-List-Protein-Binding-Site-Prediction- are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 8 months ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 6 months ago
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- ☆26Nov 28, 2025Updated 9 months ago
- ☆10Aug 5, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 3 years ago
- Files and utilities for protein-emoji☆26Nov 4, 2022Updated 3 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆100Oct 5, 2023Updated 2 years ago
- ☆16Dec 10, 2024Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆37Sep 2, 2025Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- ☆15Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆56Aug 2, 2025Updated last year
- Clusters protein chains based on CA distance difference☆19Jul 22, 2026Updated last month
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 5 years ago
- ☆77Feb 11, 2025Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆46Apr 22, 2023Updated 3 years ago
- A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures☆20Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Mutation-centric "Interaction Language Model" for Edgetic PPI prediction☆16Updated this week
- Detection of remote homology by comparison of protein language model representations☆65Dec 16, 2024Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆49Oct 28, 2023Updated 2 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- Reaction-Conditioned Virtual Screening of Enzymes☆48Jun 13, 2026Updated 2 months ago
- ☆35Nov 7, 2022Updated 3 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated last year
- ☆18May 16, 2025Updated last year
- ☆118Jul 20, 2026Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆268Mar 26, 2026Updated 5 months ago
- ☆18Aug 28, 2023Updated 3 years ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Sep 18, 2023Updated 2 years ago
- diffusion model for protein sequence generation☆51Feb 18, 2023Updated 3 years ago