List of papers on protein binding site prediction
☆11Aug 11, 2023Updated 3 years ago
Alternatives and similar repositories for Awesome-List-Protein-Binding-Site-Prediction-
Users that are interested in Awesome-List-Protein-Binding-Site-Prediction- are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- ☆19Mar 19, 2026Updated 7 months ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 7 months ago
- A Python 3 script for cleaning up the PDB file☆11Dec 20, 2017Updated 8 years ago
- ☆27Nov 28, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarks for reading and interpreting mmCIF files☆10Aug 30, 2021Updated 5 years ago
- ☆11Aug 5, 2022Updated 4 years ago
- Calculate the RMSD between two antibody structure (including nanobody and antibody).☆11May 19, 2023Updated 3 years ago
- Files and utilities for protein-emoji☆26Nov 4, 2022Updated 3 years ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- Scripts to add mmseqs MSA/templates to alphafold3 input json and also custom template files☆27Dec 4, 2024Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆100Oct 5, 2023Updated 3 years ago
- ☆16Dec 10, 2024Updated last year
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a novel approach to predict the protein solubility based on the protein sequence.☆12May 1, 2024Updated 2 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆37Sep 2, 2025Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- ☆15Sep 4, 2026Updated last month
- Structure-Informed Protein Language Model☆40Feb 15, 2024Updated 2 years ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆56Aug 2, 2025Updated last year
- A unified framework for making structural biology tools interoperable.☆66Updated this week
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 5 years ago
- Official repo for paper "AlphaFold-Multimer accurately captures interactions and dynamics of intrinsically disordered protein regions"☆17Dec 8, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Diffusion-based all-atom protein generative model.☆239Aug 27, 2025Updated last year
- A surface-based deep learning approach for the prediction of ligand binding sites on proteins☆47Apr 22, 2023Updated 3 years ago
- Clusters protein chains based on CA distance difference☆19Oct 9, 2026Updated last week
- ☆77Feb 11, 2025Updated last year
- Mutation-centric "Interaction Language Model" for Edgetic PPI prediction☆16Sep 4, 2026Updated last month
- Structure-based antibody renumbering☆17Updated this week
- ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.☆20Sep 16, 2024Updated 2 years ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- Exploring Evolution-aware & free protein language models as protein function predictors☆63Sep 28, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Detection of remote homology by comparison of protein language model representations☆66Dec 16, 2024Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- ☆35Nov 7, 2022Updated 3 years ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆50Oct 28, 2023Updated 2 years ago
- ☆19May 16, 2025Updated last year
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆95Jun 1, 2026Updated 4 months ago