Alternatives and similar repositories for rna-tools

Users that are interested in rna-tools are comparing it to the libraries listed below

• debbiemarkslab / plmc
  Inference of couplings in proteins and RNAs from sequence variation
  ☆114Updated 2 years ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆167Updated 8 months ago
• cbalbin-bio / pymol-color-alphafold
  PyMOL extension to color AlphaFold structures by confidence (pLDDT).
  ☆117Updated last year
• debbiemarkslab / EVcouplings
  Evolutionary couplings from protein and RNA sequence alignments
  ☆294Updated 2 months ago
• harmslab / pdbtools
  A set of tools for manipulating and doing calculations on wwPDB macromolecule structure files
  ☆180Updated 6 years ago
• akiyamalab / MEGADOCK
  An ultra-high-performance protein-protein docking for heterogeneous supercomputers
  ☆70Updated 2 years ago
• FreshAirTonight / af2complex
  Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
  ☆166Updated last year
• steineggerlab / foldcomp
  Compressing protein structures effectively with torsion angles
  ☆183Updated last week
• soedinglab / MMseqs2-App
  MMseqs2 app to run on your workstation or servers
  ☆101Updated last week
• kuixu / alphafold
  Install alphafold on the local machine, get out of docker.
  ☆103Updated 4 years ago
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆127Updated 2 years ago
• PDB-REDO / dssp
  Application to assign secondary structure to proteins
  ☆233Updated last month
• oxpig / ANARCI
  Antibody Numbering and Antigen Receptor ClassIfication
  ☆254Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 3 weeks ago
• PDB-REDO / alphafill
  AlphaFill is an algorithm based on sequence and structure similarity that “transplants” missing compounds to the AlphaFold models. By add…
  ☆110Updated last month
• debbiemarkslab / EVmutation
  Mutation effects predicted from sequence co-variation
  ☆70Updated 8 years ago
• greener-group / progres
  Fast protein structure searching or your money back
  ☆118Updated 2 months ago
• althonos / peptides.py
  Physicochemical properties, indices and descriptors for amino-acid sequences.
  ☆108Updated 3 months ago
• flatironinstitute / deepblast
  Neural Networks for Protein Sequence Alignment
  ☆134Updated last year
• ncbi / SSDraw
  ☆86Updated last month
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆288Updated 11 months ago
• haddocking / prodigy
  Predict the binding affinity of protein-protein complexes from structural data
  ☆165Updated 2 months ago
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆217Updated 2 years ago
• soedinglab / CCMpred
  Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.
  ☆111Updated 2 years ago
• steineggerlab / foldmason
  Multiple Protein Structure Alignment at Scale with FoldMason
  ☆203Updated 2 months ago
• cmbi / hssp
  Create DSSP and HSSP files
  ☆94Updated last year
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆111Updated 7 months ago
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆167Updated 2 years ago
• aqlaboratory / rgn2
  ☆108Updated 2 years ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆175Updated 2 years ago