🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
☆185Oct 29, 2026Updated last week
Alternatives and similar repositories for rna-tools
Users that are interested in rna-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://g…☆46Aug 18, 2026Updated 2 months ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 4 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated 4 months ago
- RNA Multiple Sequence Alignment☆53Jul 20, 2023Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆72May 8, 2026Updated 5 months ago
- Create force-directed graphs of RNA secondary structures.☆115Jun 6, 2020Updated 6 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 8 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 6 years ago
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- ☆39Dec 15, 2023Updated 2 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆21Updated this week
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- The ViennaRNA Package☆441Updated this week
- A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures☆20Updated this week
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆26Updated this week
- ☆26Jul 21, 2023Updated 3 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Oct 8, 2026Updated 3 weeks ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆322Dec 16, 2025Updated 10 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆88Oct 16, 2026Updated 3 weeks ago
- pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files.…☆13Sep 15, 2022Updated 4 years ago
- RNA secondary structure prediction tool☆21Oct 28, 2026Updated last week
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆112Nov 20, 2025Updated 11 months ago
- Integer programming based prediction of RNA secondary structures with pseudoknots☆23Oct 26, 2026Updated last week
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆19May 6, 2025Updated last year
- ☆43Oct 1, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- Software for detecting non-covalent interactions formed within complexes of nucleic acids with ligands.☆35Jun 3, 2022Updated 4 years ago
- Nature Methods: RNA foundation model (together with RhoFold)☆395May 27, 2025Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- ☆17Aug 18, 2026Updated 2 months ago
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆103Jun 5, 2026Updated 5 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year