mmagnus / rna-toolsLinks
π§rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
β179Updated this week
Alternatives and similar repositories for rna-tools
Users that are interested in rna-tools are comparing it to the libraries listed below
Sorting:
- Inference of couplings in proteins and RNAs from sequence variationβ113Updated 2 years ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteinsβ165Updated 7 months ago
- An ultra-high-performance protein-protein docking for heterogeneous supercomputersβ70Updated 2 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).β117Updated last year
- Install alphafold on the local machine, get out of docker.β103Updated 4 years ago
- Tutorials, cheat sheets, and other resources for computational methods for protein design.β124Updated 2 years ago
- Evolutionary couplings from protein and RNA sequence alignmentsβ291Updated last month
- Fast protein structure searching or your money backβ117Updated last month
- β37Updated last year
- Efficient evolution from protein language modelsβ217Updated 2 years ago
- MMseqs2 app to run on your workstation or serversβ99Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictionsβ166Updated last year
- Antibody Numbering and Antigen Receptor ClassIficationβ250Updated last year
- Convenience Python APIs for antibody numbering using ANARCIβ109Updated 6 months ago
- Mutation effects predicted from sequence co-variationβ70Updated 8 years ago
- Code for ColabDock paperβ148Updated 7 months ago
- Predict the binding affinity of protein-protein complexes from structural dataβ158Updated 2 months ago
- alphafold3 architecture step by step walkthrough.β147Updated 5 months ago
- A set of tools for manipulating and doing calculations on wwPDB macromolecule structure filesβ180Updated 6 years ago
- AlphaFill is an algorithm based on sequence and structure similarity that βtransplantsβ missing compounds to the AlphaFold models. By addβ¦β110Updated last week
- Evolutionary velocity with protein language modelsβ94Updated this week
- Direct coupling analysis software for protein and RNA sequencesβ53Updated 4 months ago
- Multiple Protein Structure Alignment at Scale with FoldMasonβ198Updated last month
- Physicochemical properties, indices and descriptors for amino-acid sequences.β107Updated 3 months ago
- Bilingual Language Model for Protein Sequence and Structureβ280Updated 11 months ago
- β31Updated 3 years ago
- Protein folding in Pymolβ127Updated 2 weeks ago
- PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.β82Updated 9 months ago
- Application to assign secondary structure to proteinsβ228Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".β60Updated 4 years ago