🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs @ http://rna-tools.rtfd.io web @ http://rna-tools.online
☆186Apr 8, 2026Updated 3 weeks ago
Alternatives and similar repositories for rna-tools
Users that are interested in rna-tools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- G33KB00K3 - fun to read & fun to write -- 🤓 eXtreme eXtendable note taking system for nerds/geeks (including scientists!) docs: http://g…☆46Apr 9, 2026Updated 3 weeks ago
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆10Apr 6, 2023Updated 3 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆67Jul 17, 2024Updated last year
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- RNA Multiple Sequence Alignment☆51Jul 20, 2023Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65Apr 3, 2026Updated last month
- Create force-directed graphs of RNA secondary structures.☆111Jun 6, 2020Updated 5 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated last year
- RNA secondary structure prediction tool☆20Apr 7, 2026Updated last month
- to assess structural quality of RNA using 3D CNN☆14Aug 17, 2018Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆23Apr 30, 2026Updated last week
- The ViennaRNA Package☆404Feb 24, 2026Updated 2 months ago
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated last year
- pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files.…☆13Sep 15, 2022Updated 3 years ago
- A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures☆19Apr 28, 2026Updated last week
- Draw RNA secondary structures in python.☆52Jun 24, 2025Updated 10 months ago
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆298Dec 16, 2025Updated 4 months ago
- With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...☆177Nov 24, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆38Dec 15, 2023Updated 2 years ago
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- Template-based RNA secondary structure visualization☆29Nov 20, 2024Updated last year
- structRFM: A fully open structure-guided RNA foundation model for robust structural and functional inference☆33Jan 25, 2026Updated 3 months ago
- Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.☆107Nov 20, 2025Updated 5 months ago
- Nature Methods: RNA foundation model (together with RhoFold)☆367May 27, 2025Updated 11 months ago
- Integer programming based prediction of RNA secondary structures with pseudoknots☆23Nov 30, 2025Updated 5 months ago
- RNA secondary structure/sequence profiles for homology search and alignment☆129Apr 22, 2026Updated 2 weeks ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆53Mar 20, 2024Updated 2 years ago
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- Toolkit for structure-based deep learning on RNA.☆46Apr 15, 2026Updated 3 weeks ago
- Script to facilitate the making of horizontal scripts☆18May 25, 2024Updated last year
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆51Nov 23, 2023Updated 2 years ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆107May 23, 2025Updated 11 months ago
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆227May 29, 2025Updated 11 months ago