Graphormer Based Protein Sequence Design
☆26Feb 2, 2024Updated 2 years ago
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 4 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 7 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆31Mar 8, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- ☆150Jul 16, 2025Updated last year
- ☆23Dec 20, 2024Updated last year
- ☆13Sep 29, 2023Updated 3 years ago
- ☆17May 18, 2026Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- ☆27May 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 7 months ago
- Pretrained METL models with minimal dependencies☆16Sep 16, 2026Updated 3 weeks ago
- ☆15Sep 4, 2026Updated last month
- ☆34Feb 5, 2025Updated last year
- The pytorch code of TDFold☆21Feb 25, 2026Updated 7 months ago
- ☆16Dec 10, 2024Updated last year
- ☆65Apr 9, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated last month
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆31Sep 13, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆24Mar 7, 2025Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆17May 4, 2026Updated 5 months ago
- Homomer symmetry prediction from protein sequence☆46Mar 13, 2025Updated last year
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 3 months ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine lear…☆29Aug 13, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆43Jun 17, 2025Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆54Dec 3, 2024Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆50Oct 28, 2023Updated 2 years ago
- Shrinking Proteins with Diffusion☆32Jan 8, 2026Updated 9 months ago
- Potts model-based protein sequence design☆117Jul 1, 2026Updated 3 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆26Mar 6, 2025Updated last year
- ☆33Dec 12, 2024Updated last year