decodermu / GPDLinks
Graphormer Based Protein Sequence Design
☆25Updated last year
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below
Sorting:
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆25Updated last year
- ☆61Updated last year
- Modelling protein conformational landscape with Alphafold☆54Updated 3 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆34Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆41Updated 8 months ago
- ☆46Updated last year
- ☆25Updated 6 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- Baseline model for PPB-Affinity benchmark data☆33Updated 6 months ago
- bakerlab pymol scripts☆25Updated 5 years ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆36Updated last month
- No description yet.☆17Updated last year
- workflow used to prepare PPB-Affinity database☆28Updated last year
- scripts to find PBD structures for cancer driver proteins☆31Updated this week
- ☆33Updated last year
- ☆30Updated 10 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆44Updated 4 months ago
- ☆29Updated 11 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆51Updated this week
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated 2 years ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated 2 years ago
- ☆15Updated 6 months ago
- Extension of ThermoMPNN for double mutant predictions☆49Updated 2 months ago
- ☆34Updated 4 months ago
- ☆39Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆46Updated last month
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆44Updated last week
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆22Updated 9 months ago
- ☆25Updated last year