decodermu / GPDLinks
Graphormer Based Protein Sequence Design
☆24Updated last year
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below
Sorting:
- ☆60Updated last year
- bakerlab pymol scripts☆24Updated 5 years ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆21Updated 4 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆29Updated last week
- IDPFold test version☆21Updated 10 months ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆35Updated 11 months ago
- ☆22Updated last month
- ☆43Updated 10 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated last month
- ☆23Updated 9 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 8 months ago
- Baseline model for PPB-Affinity benchmark data☆25Updated last month
- ☆14Updated last month
- Modelling protein conformational landscape with Alphafold☆51Updated 2 weeks ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆18Updated 4 months ago
- ☆31Updated 11 months ago
- scripts to find PBD structures for cancer driver proteins☆31Updated 4 months ago
- Code for humanization of antibody and nanobody☆44Updated 7 months ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆18Updated 6 months ago
- ☆50Updated 3 weeks ago
- ☆37Updated 2 weeks ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆60Updated 2 weeks ago
- ☆13Updated 5 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆38Updated 3 months ago
- ☆22Updated last month
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- Binding pocket optimization based on force fields and docking scoring functions☆33Updated 3 months ago
- ☆35Updated 8 months ago
- Evaluating Protein Binding Interfaces with Transformer Networks☆46Updated last year
- ☆28Updated 5 months ago