Graphormer Based Protein Sequence Design
☆26Feb 2, 2024Updated 2 years ago
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below
Sorting:
- ☆35Jun 17, 2025Updated 8 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Jul 25, 2024Updated last year
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆26Mar 8, 2025Updated 11 months ago
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆10Oct 2, 2025Updated 5 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Generative diverse protein backbones by protein language model☆34Oct 30, 2025Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- Implementation of methods to sample from Boltzmann distributions☆21Jan 24, 2023Updated 3 years ago
- ☆32Feb 5, 2025Updated last year
- ☆21Dec 20, 2024Updated last year
- ☆146Jul 16, 2025Updated 7 months ago
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆24Mar 7, 2025Updated 11 months ago
- Homomer symmetry prediction from protein sequence☆41Mar 13, 2025Updated 11 months ago
- ☆15Mar 28, 2025Updated 11 months ago
- ☆13Sep 29, 2023Updated 2 years ago
- Efficient manipulation of protein structures in Python☆63Sep 27, 2025Updated 5 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last week
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆26Sep 13, 2024Updated last year
- ☆16Updated this week
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 5 months ago
- code and source data for de novo design of Kemp elimination paper☆24Sep 18, 2025Updated 5 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Feb 13, 2026Updated 2 weeks ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆16Jul 25, 2023Updated 2 years ago
- ☆61Apr 9, 2024Updated last year
- ☆16Dec 10, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆75Jan 27, 2026Updated last month
- Learning the language of protein-protein interactions☆135Jan 12, 2026Updated last month
- bakerlab pymol scripts☆26Feb 6, 2020Updated 6 years ago
- ☆31Dec 12, 2024Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆54Jan 28, 2026Updated last month
- protein structure generation with sparse all-atom denoising models☆60Updated this week
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- ☆27Aug 8, 2025Updated 6 months ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated 11 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 7 months ago
- ☆47Sep 16, 2024Updated last year