Alternatives and similar repositories for GPD

Users that are interested in GPD are comparing it to the libraries listed below

• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆40Updated 4 months ago
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 9 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆34Updated last week
• Junjie-Zhu / IDPFold
  IDPFold test version
  ☆21Updated 11 months ago
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆35Updated last year
• anirudhvenk / antibody-dpo
  ☆23Updated 3 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆23Updated 5 months ago
• Gonglab-THU / GeoStab
  ☆35Updated 10 months ago
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆51Updated 3 months ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆19Updated 5 months ago
• ComputArtCMCG / ProBID-NET
  ☆14Updated 2 months ago
• bene837 / af2seq
  ☆44Updated 11 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 9 months ago
• Huatsing-Lau / PPB-Affinity-DataPrepWorkflow
  workflow used to prepare PPB-Affinity database
  ☆27Updated last year
• ChenPy00 / PPB-Affinity
  Baseline model for PPB-Affinity benchmark data
  ☆27Updated 3 months ago
• iamysk / AFsample2
  Modelling protein conformational landscape with Alphafold
  ☆51Updated last month
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆24Updated 5 years ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆42Updated 3 weeks ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆44Updated 9 months ago
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆47Updated last year
• sokrypton / af2bind
  ☆50Updated last month
• PKUliujl / GeoSeqBuilder
  ☆28Updated 6 months ago
• danny305 / StabilityOracle
  ☆27Updated last year
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆54Updated 9 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆43Updated 8 months ago
• bytedance / PXDesignBench
  A Unified Evaluation Suite for Protein Design
  ☆61Updated 2 weeks ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆70Updated 2 weeks ago
• ohuelab / ColabFold-cycpep-dock
  Making Protein folding accessible to all!
  ☆22Updated last year
• HannesStark / CodonMPNN
  ☆28Updated 8 months ago