Graphormer Based Protein Sequence Design
☆26Feb 2, 2024Updated 2 years ago
Alternatives and similar repositories for GPD
Users that are interested in GPD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆12Jul 31, 2026Updated 2 months ago
- ☆11Oct 7, 2025Updated last year
- Paste a protein sequence, get an a3m. Borrows AlphaFold DB's precomputed MSAs instead of running a search.☆11Aug 8, 2026Updated 2 months ago
- ☆13Sep 29, 2023Updated 3 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆66Apr 9, 2024Updated 2 years ago
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆19May 15, 2026Updated 5 months ago
- Generative diverse protein backbones by protein language model☆35Feb 27, 2026Updated 8 months ago
- Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis☆12Jan 11, 2026Updated 9 months ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆40Jul 25, 2024Updated 2 years ago
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- ☆34Feb 5, 2025Updated last year
- A structure- and epistasis-aware model for predicting higher-order protein mutant fitness.☆15Oct 13, 2026Updated 2 weeks ago
- Official repository of EnzymeFlow☆103Dec 7, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆73Feb 21, 2026Updated 8 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- ☆150Jul 16, 2025Updated last year
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆18May 4, 2026Updated 5 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆31Mar 8, 2025Updated last year
- A python implementation of pdb2oniom for QM/MM (ONIOM) calculations☆12Oct 2, 2025Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 3 years ago
- ☆16Feb 13, 2026Updated 8 months ago
- ☆17May 18, 2026Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- ☆19Dec 23, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 11 months ago
- ☆27May 16, 2026Updated 5 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆39Apr 2, 2025Updated last year
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 4 months ago
- The pytorch code of TDFold☆21Feb 25, 2026Updated 8 months ago
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 3 years ago
- ☆23Dec 20, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Homomer symmetry prediction from protein sequence☆46Mar 13, 2025Updated last year
- Towards a protein binder candidate for every protein☆43Sep 1, 2026Updated last month
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Aug 27, 2026Updated 2 months ago
- ☆186Oct 27, 2021Updated 5 years ago
- GRACE: Generative Renaissance in Artificial Computational Enzyme Design☆19Jan 8, 2025Updated last year
- ☆22Jul 14, 2023Updated 3 years ago