Python implementation of the FR3D software for searching and annotating RNA 3D structures
☆26Oct 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for fr3d-python
Users that are interested in fr3d-python are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Python library containing RNA-related bioinformatics functions and classes.☆24Oct 22, 2026Updated last week
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils…☆27Dec 3, 2024Updated last year
- Template-based RNA secondary structure visualization☆29Aug 31, 2026Updated last month
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆72May 8, 2026Updated 5 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆19May 6, 2025Updated last year
- Centroid RNA package☆20Oct 12, 2020Updated 6 years ago
- The official repository for "Find RNA 3D" (FR3D), a suite of programs for searching RNA 3D structures.☆10Jan 29, 2025Updated last year
- Small Molecule Approach to RNA Targeting Binder Discovery (SMARTBind) Using Deep Learning Without Structural Input☆13Sep 2, 2026Updated last month
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation☆32Aug 8, 2026Updated 2 months ago
- RNA Structural Covariation Above Phylogenetic Expectation☆25Oct 21, 2026Updated last week
- RNA secondary structure prediction tool☆21Updated this week
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Oct 8, 2026Updated 3 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆26Jul 21, 2023Updated 3 years ago
- ☆60Aug 9, 2026Updated 2 months ago
- ☆37Jan 14, 2025Updated last year
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- An analysis of a new experimentally-derived nucleic acid binding chemical library☆35Jan 27, 2023Updated 3 years ago
- ☆14Sep 19, 2026Updated last month
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆321Dec 16, 2025Updated 10 months ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆21Oct 20, 2026Updated last week
- Toolkit for structure-based deep learning on RNA.☆46Oct 20, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline for structural clustering of RNA secondary structures☆15Apr 21, 2021Updated 5 years ago
- ☆12Oct 3, 2026Updated 3 weeks ago
- Simulation code for the prediction of RNA structures.☆14Jan 21, 2025Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Oct 17, 2026Updated last week
- An RNA manipulation library.☆56Feb 16, 2024Updated 2 years ago
- Draw RNA secondary structures in python.☆54Jun 24, 2025Updated last year
- ☆16Sep 28, 2026Updated last month
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆57Nov 17, 2024Updated last year
- Rapid mining of RNA structure motifs from profiling data.☆15Oct 20, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Integer programming based prediction of RNA secondary structures with pseudoknots☆23Updated this week
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io☆14Nov 3, 2022Updated 3 years ago
- Semiautomated layout of RNA tertiary structure diagrams☆17Feb 26, 2025Updated last year
- Create force-directed graphs of RNA secondary structures.☆115Jun 6, 2020Updated 6 years ago
- ☆20Oct 18, 2024Updated 2 years ago
- ROAD facilitates the design of RNA nanostructures using the RNA origami method.☆12Sep 23, 2024Updated 2 years ago