Alternatives and similar repositories for fr3d-python

Users that are interested in fr3d-python are comparing it to the libraries listed below

• csi-greifflab / manuscript_insilico_antibody_generation
  ☆24Updated 3 years ago
• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆27Updated last year
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆28Updated last year
• minmarg / gtalign_alpha
  GTalign, HPC protein structure alignment, superposition and search (alpha release)
  ☆45Updated 3 weeks ago
• CongLabCode / DPAM
  A domain parser for Alphafold models
  ☆38Updated last year
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆44Updated last month
• labstructbioinf / pLM-BLAST
  Detection of remote homology by comparison of protein language model representations
  ☆54Updated 6 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆88Updated last year
• graph-part / graph-part
  GraphPart, a data partitioning method for ML on biological sequences
  ☆28Updated last year
• swanss / peptide_design
  This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"
  ☆17Updated last year
• labstructbioinf / localpdb
  Python package to manage protein structures and their annotations
  ☆43Updated last year
• proteinphysiologylab / frustratometeR
  ☆36Updated this week
• JudeWells / chainsaw
  ☆40Updated 9 months ago
• psipred / ted-tools
  ML toolset for creating TED: The Encyclopedia of Domains
  ☆21Updated 3 weeks ago
• SNU-CSSB / RF2-Lite
  ☆30Updated last year
• DeepRank / DeepRank-GNN-esm
  Graph Network for protein-protein interface including language model features
  ☆32Updated last year
• psipred / merizo_search
  Fast protein domain structure embedding+search tool
  ☆21Updated last month
• Faezov / PDBrenum
  ☆30Updated last month
• Rappsilber-Laboratory / AlphaLink2
  AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer
  ☆57Updated last month
• psipred / s4pred
  A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence
  ☆54Updated 2 months ago
• kad-ecoli / BeEM
  Conversion of PDBx/mmCIF files to best effort/minimal PDB files
  ☆18Updated 7 months ago
• rochoa85 / PepFun
  Bioinformatics and Cheminformatics protocols for peptide analysis
  ☆42Updated 2 years ago
• hesther / enzymemap
  Python package to atom map, correct and suggest enzymatic reactions
  ☆38Updated last year
• GodzikLab / FATCAT-dist
  ☆15Updated 2 years ago
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• CongLabCode / RoseTTAFold2-PPI
  Fast deep learning methods for large-scale protein-protein interaction screening
  ☆41Updated last month
• UCLOrengoGroup / cath-alphaflow
  ☆21Updated last month
• jurgjn / af-protein-universe
  Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…
  ☆25Updated last year
• samgoldman97 / enzyme-datasets
  Enzyme datasets used to benchmark enzyme-substrate promiscuity models
  ☆35Updated 3 years ago
• leandroradusky / pyfoldx
  pyFoldX: python bindings for FoldX.
  ☆46Updated 3 years ago