BGSU-RNA / fr3d-python
Python implementation of the FR3D software for searching and annotating RNA 3D structures
☆18Updated last month
Alternatives and similar repositories for fr3d-python
Users that are interested in fr3d-python are comparing it to the libraries listed below
Sorting:
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆27Updated last year
- Machine learning prediction of enzyme optimum pH☆36Updated 2 weeks ago
- ☆29Updated last year
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆19Updated last month
- ☆36Updated 3 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆27Updated last year
- ☆28Updated 11 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆37Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆36Updated last week
- A domain parser for Alphafold models☆36Updated last year
- ☆19Updated last year
- ☆15Updated 2 years ago
- Ultra-fast in-silico structure mutation☆33Updated last month
- ☆20Updated this week
- ☆22Updated last year
- Python package to manage protein structures and their annotations☆42Updated last year
- ☆38Updated 7 months ago
- Fragment binding prediction with ColabFold☆34Updated last month
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- a fast and accurate physical energy function extended from EvoEF for protein sequence design☆29Updated 2 years ago
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆17Updated last year
- Fast protein domain structure embedding+search tool☆19Updated this week
- ☆24Updated 3 years ago
- Detection of remote homology by comparison of protein language model representations☆51Updated 4 months ago
- A python package and collection of scripts for computing protein surface meshes, chemical, electrostatic, geometric features, and buildin…☆25Updated last month
- ☆36Updated 6 months ago
- GTalign, HPC protein structure alignment, superposition and search (alpha release)☆43Updated 4 months ago
- CARE: a Benchmark Suite for the Classification and Retrieval of Enzymes☆34Updated 3 months ago
- ☆17Updated 2 years ago