BGSU-RNA / fr3d-pythonLinks
Python implementation of the FR3D software for searching and annotating RNA 3D structures
☆21Updated this week
Alternatives and similar repositories for fr3d-python
Users that are interested in fr3d-python are comparing it to the libraries listed below
Sorting:
- Fast and accurate protein structure prediction☆57Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated 2 years ago
- Learning Protein Constitutive Motifs from Sequence Data: RBM toolbox☆20Updated 7 years ago
- ☆33Updated last year
- ☆33Updated 4 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆60Updated 4 years ago
- A structure-based, alignment-free embedding approach for proteins. Can be used as input to machine learning algorithms.☆41Updated 2 years ago
- ☆30Updated 8 months ago
- ☆36Updated last year
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Updated 5 months ago
- scripts and facilities for in-silico mutagenesis with FoldX☆66Updated last month
- Code, intermediate results and an interactive visualisation on prediction of putative novel enzymes and small molecule binding proteins p…☆27Updated 2 years ago
- pdbx is a parser module in python for structures of the protein data bank in the mmcif format☆30Updated last year
- Computational tools for extremely low-cost, massively parallel amplicon-based sequencing of every variant in protein mutant libraries.☆34Updated 3 years ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆34Updated 5 months ago
- A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence☆63Updated 10 months ago
- Graph Network for protein-protein interface including language model features☆34Updated last year
- ML toolset for creating TED: The Encyclopedia of Domains☆25Updated 8 months ago
- ☆19Updated 11 months ago
- This repository contains the stand-alone tool for MusiteDeep server☆35Updated 5 years ago
- Python package to manage protein structures and their annotations☆45Updated last year
- ☆47Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆33Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Updated 7 months ago
- Detection of remote homology by comparison of protein language model representations☆61Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆38Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- PLM-interact: extending protein language models to predict protein-protein interactions.☆60Updated 5 months ago
- ☆25Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆72Updated 8 years ago