hendrixlab / bpRNA
bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
☆43Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for bpRNA
- Draw RNA secondary structures in python.☆43Updated 2 months ago
- Evolutionary velocity with protein language models☆83Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- RNA Multiple Sequence Alignment☆24Updated last year
- ☆66Updated last year
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆49Updated 3 months ago
- ☆43Updated last year
- Protein design and variant prediction using autoregressive generative models☆92Updated 9 months ago
- ☆101Updated 11 months ago
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated this week
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆95Updated last year
- ☆27Updated last week
- ☆59Updated 11 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆62Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 6 months ago
- ☆46Updated last year
- Protein language model trained on coding DNA☆38Updated 2 weeks ago
- Neural networks for deep mutational scanning data☆66Updated this week
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆20Updated last year
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆31Updated 2 years ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆71Updated 3 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆83Updated 2 months ago
- Direct coupling analysis software for protein and RNA sequences☆45Updated last year
- ☆63Updated last month
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆77Updated 7 months ago
- Analysis and figure code from Alley et al. 2019.☆58Updated last year
- ☆45Updated 5 months ago
- ☆18Updated 3 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆115Updated 2 weeks ago