hendrixlab / bpRNALinks
bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
☆50Updated last year
Alternatives and similar repositories for bpRNA
Users that are interested in bpRNA are comparing it to the libraries listed below
Sorting:
- Draw RNA secondary structures in python.☆49Updated 4 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆105Updated 5 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- ☆82Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- Neural Networks for Protein Sequence Alignment☆131Updated last year
- ☆48Updated 11 months ago
- ☆75Updated 6 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Feature map and function annotation of Proteins☆34Updated last year
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Updated 2 years ago
- Multi-class signal peptide prediction and structure decoding model.☆97Updated 9 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆31Updated 2 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆48Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Genomic language model predicts protein co-regulation and function☆83Updated 7 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆149Updated 4 months ago
- ☆39Updated 4 years ago
- ☆36Updated 10 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Deep networks for protein functional inference☆179Updated 5 months ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆76Updated 3 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆35Updated 2 months ago
- Biological prediction models made simple.☆46Updated 2 weeks ago
- ☆73Updated last year