hendrixlab / bpRNALinks
bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
☆50Updated last year
Alternatives and similar repositories for bpRNA
Users that are interested in bpRNA are comparing it to the libraries listed below
Sorting:
- Draw RNA secondary structures in python.☆49Updated 4 months ago
- Evolutionary velocity with protein language models☆94Updated 2 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆62Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆105Updated 5 months ago
- ☆80Updated 2 years ago
- Mutation effects predicted from sequence co-variation☆70Updated 8 years ago
- ☆36Updated 9 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Feature map and function annotation of Proteins☆33Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆75Updated 3 months ago
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- Neural Networks for Protein Sequence Alignment☆130Updated 11 months ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆148Updated 4 months ago
- ☆74Updated 6 months ago
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 8 months ago
- Prediction of binding residues for metal ions, nucleic acids, and small molecules.☆35Updated last month
- python tools for TCR:peptide-MHC modeling and analysis☆82Updated last year
- ☆48Updated 10 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Analysis and figure code from Alley et al. 2019.☆59Updated 2 years ago
- Protein language model trained on coding DNA☆51Updated last year
- Deep mutational scanning of the receptor-binding domain of SARS-CoV-2 Spike☆46Updated 3 years ago
- Automatic oligonucleotide design for PCR-based gene synthesis☆47Updated 6 years ago
- Arnie-based DegScore tool.☆27Updated 3 years ago
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆90Updated last year
- Protein sequence classification with self-supervised pretraining☆82Updated 3 years ago