hendrixlab / bpRNA
bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure
☆47Updated last year
Alternatives and similar repositories for bpRNA:
Users that are interested in bpRNA are comparing it to the libraries listed below
- Evolutionary velocity with protein language models☆90Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Draw RNA secondary structures in python.☆47Updated 7 months ago
- Mutation effects predicted from sequence co-variation☆64Updated 7 years ago
- ☆52Updated last year
- ☆36Updated 3 months ago
- RNA Multiple Sequence Alignment☆39Updated last year
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆83Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆84Updated 2 months ago
- ☆73Updated last year
- ☆68Updated last year
- ☆24Updated last year
- ☆104Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆48Updated 8 months ago
- ☆67Updated 6 months ago
- Protein language model trained on coding DNA☆46Updated 6 months ago
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆100Updated 2 years ago
- ☆19Updated 4 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆57Updated 9 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆52Updated 11 months ago
- Improved RNA Secondary Secondary Structure Prediction using Evolutionary Profile, Mutational Coupling and Two-dimensional Transfer Learni…☆28Updated 4 years ago
- ☆35Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆68Updated 2 years ago
- Feature map and function annotation of Proteins☆33Updated 10 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆74Updated last year
- Genomic language model predicts protein co-regulation and function☆75Updated last month
- Automatic oligonucleotide design for PCR-based gene synthesis☆44Updated 5 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- Fast protein structure searching or your money back☆102Updated last week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 2 years ago