Alternatives and similar repositories for DeepFoldRNA

Users that are interested in DeepFoldRNA are comparing it to the libraries listed below

• pylelab / rMSA
  RNA Multiple Sequence Alignment
  ☆43Updated 2 years ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆106Updated 4 months ago
• marcellszi / rna3db
  A dataset for training and benchmarking deep learning models for RNA structure prediction
  ☆58Updated 7 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆59Updated 6 months ago
• JinyuanSun / PymolFold
  Protein folding in Pymol
  ☆109Updated 6 months ago
• prihoda / AbNumber
  Convenience Python APIs for antibody numbering using ANARCI
  ☆102Updated 2 months ago
• oxpig / ImmuneBuilder
  Predict the structure of immune receptor proteins
  ☆148Updated 6 months ago
• pylelab / USalign
  Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins
  ☆154Updated 3 months ago
• aqlaboratory / rgn2
  ☆107Updated last year
• VarunUllanat / mint
  Learning the language of protein-protein interactions
  ☆85Updated 3 weeks ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆78Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆116Updated 4 months ago
• varun-shanker / structural-evolution
  ☆111Updated last year
• HWaymentSteele / AF_Cluster
  Predict multiple protein conformations using sequence clustering and AlphaFold2.
  ☆159Updated last week
• phbradley / alphafold_finetune
  Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions
  ☆155Updated last year
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆68Updated 6 months ago
• ievapudz / TemStaPro
  TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.
  ☆59Updated last year
• idmjky / EvolvePro
  PLM based active learning model for protein engineering
  ☆82Updated last year
• Graylab / AlphaRED
  AlphaFold-initiated replica exchange protein docking
  ☆83Updated 2 months ago
• JeffSHF / ColabDock
  Code for ColabDock paper
  ☆142Updated 3 months ago
• alchemab / antiberta
  Public repository describing training and testing of AntiBERTa.
  ☆60Updated 2 years ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆128Updated 2 months ago
• yikunpku / RNA-MSM
  Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…
  ☆65Updated last year
• debbiemarkslab / SeqDesign
  Protein design and variant prediction using autoregressive generative models
  ☆108Updated last year
• Shunsuke-1994 / rfamgen
  Code repository of "Deep generative design of RNA family sequences"
  ☆35Updated last year
• ProteinDesignLab / protein-design-tutorials
  Tutorials, cheat sheets, and other resources for computational methods for protein design.
  ☆115Updated last year
• AbSciBio / igdesign
  ☆43Updated 6 months ago
• KULL-Centre / _2022_ML-ddG-Blaabjerg
  ☆51Updated this week
• flyark / AFM-LIS
  Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)
  ☆58Updated 4 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated last month