Alternatives and similar repositories for geometric-rna-design

Users that are interested in geometric-rna-design are comparing it to the libraries listed below

• a-r-j / ProteinWorkshop
  Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …
  ☆250Updated 3 months ago
• BorgwardtLab / proteinshake
  Protein structure datasets for machine learning.
  ☆111Updated 3 months ago
• azminewasi / Awesome-MoML-ICLR25
  ALL Molecular ML papers from ICLR'25.
  ☆38Updated 4 months ago
• Genentech / equifold
  Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation
  ☆121Updated 2 years ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆131Updated 3 months ago
• biolists / biodiffusion
  A list of manuscripts/tools using diffusion on biological enttieis
  ☆97Updated last year
• prescient-design / lobster
  Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation
  ☆123Updated this week
• BioinfoMachineLearning / bio-diffusion
  A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)
  ☆212Updated 2 months ago
• drorlab / gvp
  Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆148Updated 4 years ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆212Updated last year
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆94Updated 3 months ago
• divnori / rnaflow
  RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
  ☆65Updated 11 months ago
• DeepGraphLearning / GearNet
  GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
  ☆298Updated last month
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆102Updated 10 months ago
• lucidrains / chroma-pytorch
  Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch
  ☆159Updated 2 years ago
• OpenBioML / protein-lm-scaling
  ☆58Updated last year
• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆193Updated 2 weeks ago
• rish-16 / rna-backbone-design
  Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design
  ☆73Updated last month
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆210Updated 5 months ago
• bjing2016 / mdgen
  Generative modeling of molecular dynamics trajectories
  ☆162Updated 4 months ago
• FreyrS / dMaSIF
  ☆215Updated 2 years ago
• valence-labs / mtl_summer_school_2024
  ☆44Updated last year
• t7morgen / misato-dataset
  ☆212Updated 10 months ago
• rmrao / msa-transformer
  MSA Transformer reproduction code
  ☆83Updated 3 years ago
• octavian-ganea / equidock_public
  EquiDock: geometric deep learning for fast rigid 3D protein-protein docking
  ☆244Updated last year
• jasonkyuyim / multiflow
  ☆189Updated last year
• BytedProtein / ByProt
  ☆198Updated 10 months ago
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆109Updated last year
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆181Updated last year
• drorlab / gvp-pytorch
  Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆289Updated 2 years ago