Shunsuke-1994 / rfamgen
Code repository of "Deep generative design of RNA family sequences"
☆28Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for rfamgen
- ☆63Updated last month
- Geometric deep learning of protein–DNA binding specificity☆48Updated 3 weeks ago
- ☆29Updated 10 months ago
- Universal Structure Alignment of Monomeric and Complex Structure of Nucleic Acids and Proteins☆110Updated this week
- ☆45Updated 5 months ago
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆83Updated 2 months ago
- ☆80Updated 3 months ago
- ☆27Updated last week
- Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning☆77Updated 7 months ago
- ☆33Updated last month
- A domain parser for Alphafold models☆32Updated 10 months ago
- python tools for TCR:peptide-MHC modeling and analysis☆66Updated 6 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- ☆70Updated last month
- RNA Multiple Sequence Alignment☆24Updated last year
- The code used to generate the results from Parkinson / Hard et al. 2022☆17Updated this week
- ☆18Updated 5 months ago
- Download pdb/protein structures using Uniprot id; This script will download related PDB files, extract chains(Optional), remove duplicate…☆37Updated 3 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆42Updated last month
- Feature map and function annotation of Proteins☆30Updated 4 months ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆30Updated last month
- Detection of remote homology by comparison of protein language model representations☆44Updated last week
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆39Updated 5 months ago
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆47Updated 7 months ago
- Protein language model trained on coding DNA☆38Updated 2 weeks ago
- ☆66Updated last year
- The code for paper "Synthetic Promoter Design in Escherichia coli based on Deep Genera-tive Network"☆26Updated 4 years ago
- Nucleic Acids Research 2024：RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆45Updated 3 months ago
- Evolutionary velocity with protein language models☆83Updated last year
- Mutation effects predicted from sequence co-variation☆61Updated 7 years ago