RNA 3D structure prediction using multiple sequence alignment information docs @ http://EvoClustRNA.rtfd.io
☆14Nov 3, 2022Updated 4 years ago
Alternatives and similar repositories for EvoClustRNA
Users that are interested in EvoClustRNA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- to assess structural quality of RNA using 3D CNN☆15Aug 17, 2018Updated 8 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 4 years ago
- see what you are working on with XBar, Conky ;-) [if using emacs/orgmode/clocking] + alternatives☆12Nov 15, 2022Updated 3 years ago
- pdb-mode is an emacs-lisp minor mode for Emacs to perform a number of useful editing functions on Protein DataBank (PDB) formatted files.…☆13Sep 15, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Sample and predict coarse grain 3D RNA structures☆10Feb 12, 2024Updated 2 years ago
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- Nucleic acids Structure Prediction☆10May 21, 2020Updated 6 years ago
- Robust RNA structure refinement by a nucleobase-centric sampling algorithm coupled with a backbone rotameric and quantum-mechanical-energ…☆20Apr 3, 2021Updated 5 years ago
- A collection of molecular modelling tools for UCSF Chimera☆18Mar 26, 2019Updated 7 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆72May 8, 2026Updated 5 months ago
- Base pair-augmented SE(3)-flow matching for conditional RNA 3D structure generation☆32Aug 8, 2026Updated 2 months ago
- Python/TF1 implementation of DeepAccNet (https://www.biorxiv.org/content/10.1101/2020.07.17.209643v1)☆10Sep 2, 2020Updated 6 years ago
- Centroid RNA package☆20Oct 12, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- A platform to do RNA science☆28Mar 7, 2021Updated 5 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆19May 6, 2025Updated last year
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆88Oct 16, 2026Updated 3 weeks ago
- python simulation interface for molecular modeling. To cite this software publication: https://www.sciencedirect.com/science/article/pii/…☆13Aug 24, 2016Updated 10 years ago
- A wxPython graphical interface for the PyRosetta and Rosetta protein modeling suites☆29May 23, 2018Updated 8 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆56Updated this week
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆26Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- RNAblueprint library for uniform sampling of RNA sequences given structural and sequence constraints☆10Jul 29, 2024Updated 2 years ago
- Library for coarse-grained simulations of probes flexibly coupled to biomolecules.☆10Apr 25, 2026Updated 6 months ago
- Program to generate small angle scattering curve from 3D model☆12Jun 14, 2024Updated 2 years ago
- Exercises from Hefin I. Rhys' book, "Machine Learning with R, the tidyverse and mlr" by Manning Press☆11Jul 4, 2020Updated 6 years ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆24Sep 7, 2023Updated 3 years ago
- A novel approach to pose selection in protein-ligand docking based on graph theory.☆20Nov 22, 2016Updated 9 years ago
- Python Scripts for Bioinformatics☆15Apr 24, 2024Updated 2 years ago
- A Python library containing RNA-related bioinformatics functions and classes.☆24Updated this week
- Python utilities for handling Rosetta output and PDB files☆16Sep 26, 2011Updated 15 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Probabilistic Inference for NOvel Therapeutics☆15Feb 5, 2022Updated 4 years ago
- A Python application to find and classify tetrads and quadruplexes in DNA/RNA 3D structures☆20Updated this week
- PyMOL plugin to calculate accessible contact volumes on PDB structures☆13Mar 17, 2025Updated last year
- Comparison of principal components analysis with diffusion maps on toy data sets and a molecular simulation trajectory☆17Feb 1, 2017Updated 9 years ago
- ☆26Jul 21, 2023Updated 3 years ago
- The ChIP-Seq peak calling algorithm using convolution neural networks☆15Jan 18, 2021Updated 5 years ago
- Scripts for plotting figures and running analysis throughout the manuscript☆11Nov 2, 2021Updated 5 years ago