Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
☆27Dec 3, 2024Updated last year
Alternatives and similar repositories for RNA_assessment
Users that are interested in RNA_assessment are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- QRNAS: Quick Refinement of Nucleic Acid Structures☆18Apr 30, 2025Updated last year
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆25Jul 1, 2026Updated 3 weeks ago
- Single-sequence and Profile-based Prediction of RNA Solvent Accessibility Using Dilated Convolution Neural Network☆13Jun 22, 2022Updated 4 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 2 months ago
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Apr 8, 2026Updated 3 months ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Analyse Nucleic Acids Structure and Simulations with baRNAba☆59Mar 20, 2024Updated 2 years ago
- A Python library containing RNA-related bioinformatics functions and classes.☆23Updated this week
- Python code to run Supervised Molecular Dynamics (SuMD) simulations☆16Apr 24, 2024Updated 2 years ago
- RNA Structural Bioinformatics Crash Course & Data Science in Python☆14Oct 19, 2022Updated 3 years ago
- awesome tools for RNA☆17Nov 15, 2022Updated 3 years ago
- RNAdvisor is a docker-based wrapper that integrates other metrics and scoring functions for RNA 3D structure evaluation.☆18May 6, 2025Updated last year
- ☆67Jul 15, 2026Updated last week
- CryoREAD: a computational tool using deep learning to automatically build full DNA/RNA atomic structure from cryo-EM map.☆34Oct 14, 2024Updated last year
- A collection of tools that generate and analyse side-chain rotamer libraries☆10Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Nature Methods: RhoFold+, Accurate RNA 3D structure prediction using a language model-based deep learning approach☆243May 29, 2025Updated last year
- RNA Secondary Structure Prediction using an Ensemble of Two-dimensional Deep Neural Networks and Transfer Learning.☆106May 23, 2025Updated last year
- Predicting RNA 3D structure and conformers using a pre-trained secondary structure model and structure-aware attention☆37Apr 21, 2026Updated 3 months ago
- 6.790 | Machine Learning | Draft Site/Notes☆15Dec 5, 2025Updated 7 months ago
- ☆32Apr 9, 2024Updated 2 years ago
- RiboNucleic Acid (RNA) Language Model☆169May 4, 2026Updated 2 months ago
- Clusters protein chains based on CA distance difference☆18Updated this week
- OPUS-Rota4: A Gradient-Based Protein Side-Chain Modeling Framework Assisted by Deep Learning-Based Predictors☆11Apr 14, 2022Updated 4 years ago
- ☆21Jul 16, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆35Jan 14, 2025Updated last year
- RNAPro is a state-of-the-art RNA 3D folding model developed in collaboration with the hosts and winners of the Stanford RNA 3D Folding Ka…☆91Jun 5, 2026Updated last month
- AnnapuRNA: a scoring function for predicting RNA-small molecule interactions.☆21Apr 5, 2024Updated 2 years ago
- NuFold: End-to-End Approach for RNA Tertiary Structure Prediction with Flexible Nucleobase Center Representation☆52Oct 31, 2025Updated 8 months ago
- ☆23Jul 14, 2024Updated 2 years ago
- wwPDB PDBx/mmCIF Dictionary☆10Updated this week
- ☆19Oct 18, 2024Updated last year
- Machine learning utility functions and classes.☆12Jan 14, 2023Updated 3 years ago
- The bioplib library☆12Jul 25, 2023Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Create force-directed graphs of RNA secondary structures.☆113Jun 6, 2020Updated 6 years ago
- The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-base…☆51Aug 22, 2024Updated last year
- gRNAde is a Generative AI framework for inverse design of 3D RNA structure and function☆310Dec 16, 2025Updated 7 months ago
- Custom fork of AlphaFold 3 enabling explicit modeling of crosslinks☆21Apr 21, 2026Updated 3 months ago
- ☆12Sep 13, 2020Updated 5 years ago
- pytorch implementation for "RNA Secondary Structure Prediction By Learning Unrolled Algorithms"☆123Apr 7, 2024Updated 2 years ago
- Direct coupling analysis software for protein and RNA sequences☆61Jul 21, 2025Updated last year