RNA-Puzzles / RNA_assessmentLinks
Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
☆23Updated last year
Alternatives and similar repositories for RNA_assessment
Users that are interested in RNA_assessment are comparing it to the libraries listed below
Sorting:
- RNA Multiple Sequence Alignment☆47Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated last week
- Efficient implementatin of ESM family.☆79Updated 4 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆89Updated last year
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 5 years ago
- ☆109Updated 2 years ago
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- ☆124Updated last week
- ☆75Updated 4 years ago
- Code for humanization of antibody and nanobody☆70Updated 4 months ago
- ☆38Updated 2 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated last month
- Learning the language of protein-protein interactions☆124Updated 2 weeks ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated 8 months ago
- Official Implementation of IgGM☆177Updated last month
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Updated last month
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- Official repository of EnzymeFlow☆97Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆102Updated this week
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 2 months ago
- Generative method to design novel proteins using a diffusion model☆43Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆115Updated 5 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆61Updated 5 months ago
- MSA Transformer reproduction code☆90Updated 4 years ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆110Updated 2 months ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆42Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆86Updated 11 months ago
- Python bindings for the TM-align algorithm and code for protein structure comparison developed by Zhang et al.☆64Updated 2 months ago
- ☆94Updated 3 months ago