RNA-Puzzles / RNA_assessmentLinks
Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
☆22Updated 8 months ago
Alternatives and similar repositories for RNA_assessment
Users that are interested in RNA_assessment are comparing it to the libraries listed below
Sorting:
- ☆107Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆78Updated last year
- RNA Multiple Sequence Alignment☆43Updated 2 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆58Updated 7 months ago
- ☆36Updated 6 months ago
- Efficient implementatin of ESM family.☆59Updated 6 months ago
- ☆62Updated 9 months ago
- Public repository describing training and testing of AntiBERTa.☆60Updated 2 years ago
- Aligning protein generative models with experimental fitness☆102Updated 2 months ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆68Updated 6 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆116Updated 4 months ago
- Code for our paper "Protein sequence design with a learned potential"☆79Updated last year
- ☆68Updated 3 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆48Updated last week
- ☆74Updated last year
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆65Updated last year
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)☆58Updated 4 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆31Updated 11 months ago
- open source code for Tencent tFold☆106Updated 4 months ago
- ☆43Updated 7 months ago
- MSA Transformer reproduction code☆83Updated 3 years ago
- Protein Design by Machine Learning guided Directed Evolution☆44Updated 4 months ago
- ☆35Updated last year
- GraphSite: protein-DNA binding site prediction using graph transformer and predicted protein structures☆60Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆102Updated 10 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated last month
- Tool for modelling the CDRs of antibodies☆50Updated 2 years ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆53Updated 7 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆51Updated 4 months ago