RNA-Puzzles / RNA_assessmentLinks
Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
☆22Updated 6 months ago
Alternatives and similar repositories for RNA_assessment
Users that are interested in RNA_assessment are comparing it to the libraries listed below
Sorting:
- RNA Multiple Sequence Alignment☆41Updated last year
- ☆35Updated last year
- Efficient implementatin of ESM family.☆56Updated 4 months ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated 11 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆56Updated 5 months ago
- ☆37Updated 4 months ago
- ☆40Updated 4 months ago
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆54Updated 7 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆29Updated 9 months ago
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations☆60Updated 3 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆40Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated 4 months ago
- ☆67Updated 2 months ago
- ☆106Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆42Updated 2 months ago
- Python package to atom map, correct and suggest enzymatic reactions☆38Updated last year
- Ultra-fast in-silico structure mutation☆34Updated 2 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated 2 weeks ago
- ☆81Updated 2 months ago
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆58Updated 4 years ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆57Updated 6 months ago
- ☆37Updated last week
- Public version for Distance-AF☆22Updated last year
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- ☆17Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆72Updated last year
- ☆43Updated 8 months ago
- Protein language model trained on coding DNA☆47Updated 7 months ago
- Aligning protein generative models with experimental fitness☆96Updated 3 weeks ago