RNA-Puzzles / RNA_assessmentLinks
Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
☆22Updated 6 months ago
Alternatives and similar repositories for RNA_assessment
Users that are interested in RNA_assessment are comparing it to the libraries listed below
Sorting:
- RNA Multiple Sequence Alignment☆42Updated last year
- dMaSIF implementation for google colab☆32Updated 2 years ago
- ☆36Updated 5 months ago
- ☆35Updated last year
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆56Updated 6 months ago
- Efficient implementatin of ESM family.☆58Updated 5 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆41Updated last month
- Machine learning models for antibody sequences in PyTorch☆39Updated 4 years ago
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆35Updated 4 years ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆69Updated last week
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆59Updated 4 years ago
- ☆41Updated 5 months ago
- Bioinformatics and Cheminformatics protocols for peptide analysis☆42Updated 2 years ago
- ☆68Updated 3 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆57Updated last month
- ☆57Updated 8 months ago
- ☆107Updated last year
- ☆46Updated last year
- Tool for modelling the CDRs of antibodies☆48Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆29Updated last year
- Public version for Distance-AF☆22Updated 3 weeks ago
- Ultra-fast in-silico structure mutation☆34Updated 2 months ago
- pyFoldX: python bindings for FoldX.☆46Updated 3 years ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆37Updated 2 months ago
- Antibody Annotation - Annotate VH and VL sequences (FR and CDR) in Python☆30Updated 2 years ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆35Updated 4 years ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆77Updated last year
- Protein design and variant prediction using autoregressive generative models☆23Updated 2 years ago
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆24Updated last year
- Predict disorder and disorder binding from AlphaFold structures☆16Updated 7 months ago