RNA-Puzzles / RNA_assessment
Basic RNA 3D structure comparison metrics in RNA-Puzzles, including INF, DI and RMSD. It also includes `RNA_normalizer` tool in pdb_utils.
☆17Updated 2 months ago
Related projects: ⓘ
- ☆24Updated 2 months ago
- RhoFold+: Accurate RNA 3D structure prediction using a language model-based deep learning approach☆25Updated 7 months ago
- RNA Multiple Sequence Alignment☆24Updated last year
- Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".☆56Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆39Updated this week
- Graph Network for protein-protein interface including language model features☆25Updated 5 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆35Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆58Updated 2 months ago
- AlphaLink2: Integrating crosslinking MS data into Uni-Fold-Multimer☆45Updated last month
- Ultra-fast in-silico structure mutation☆32Updated last year
- Machine learning models for antibody sequences in PyTorch☆38Updated 3 years ago
- Code for holographic machine learning of proteins☆19Updated last year
- Tool for modelling the CDRs of antibodies☆43Updated last year
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆18Updated last year
- ☆23Updated last month
- An unofficial re-implementation of AntiBERTy, an antibody-specific protein language model, in PyTorch.☆22Updated 6 months ago
- PyMOL extension to color AlphaFold structures by confidence (pLDDT).☆61Updated last month
- ☆21Updated this week
- Python implementation of the FR3D software for searching and annotating RNA 3D structures☆15Updated this week
- Fork of matteofigliuzzi/bmDCA repository for Boltzmann-machine Direct Coupling Analysis (bmDCA).☆33Updated 4 years ago
- ☆55Updated this week
- Code and data used in https://doi.org/10.1101/2021.08.01.454656☆51Updated 2 years ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆22Updated 3 months ago
- Protein Design by Machine Learning guided Directed Evolution☆22Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆47Updated 4 months ago
- Protein design and variant prediction using autoregressive generative models☆88Updated 7 months ago
- An antibody-specific language model focusing on NGL prediction☆17Updated 3 weeks ago
- ☆22Updated 3 years ago
- Protein design and variant prediction using autoregressive generative models☆22Updated last year
- ☆11Updated 3 months ago