Differentiable RNA folding in JAX
☆29Mar 25, 2025Updated last year
Alternatives and similar repositories for jax-rnafold
Users that are interested in jax-rnafold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Eterna100-V2 benchmarking results and scripts☆13May 19, 2026Updated last month
- ☆22Dec 20, 2024Updated last year
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- Linear-Time Approximation of RNA Folding Partition Function and Base Pairing Probabilities☆35May 24, 2024Updated 2 years ago
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆20Jul 11, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆23Jul 14, 2024Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆68Updated this week
- RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…☆18May 9, 2023Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆65May 8, 2026Updated last month
- ☆29Oct 3, 2023Updated 2 years ago
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- Code repository of "Deep generative design of RNA family sequences"☆42Apr 8, 2026Updated 2 months ago
- Predicting molecular structure from multimodal spectroscopic data☆29Mar 9, 2026Updated 3 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Python module to manipulate and visualize minimap2's cs tag☆11Jul 28, 2024Updated last year
- RNAGym is an extensive benchmark suite and resource for RNA fitness and structure prediction☆39Feb 25, 2026Updated 3 months ago
- Repository for Fall 2019 incarnation of Bayesian Statistics at Carleton College.☆12Mar 16, 2021Updated 5 years ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- Code for our tutorial on Discrete Variational Autoencoders☆33May 19, 2025Updated last year
- Inverted Repeats Finder: a program to analyze DNA and RNA sequences☆21Feb 21, 2025Updated last year
- ☆12Jan 23, 2020Updated 6 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Soccer Trajectory Prediction Competition☆15Aug 28, 2025Updated 9 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Proof-of-concept Typst webapp alternative☆22May 7, 2024Updated 2 years ago
- Parallel solution for local RNA secondary structure analysis☆12Feb 14, 2023Updated 3 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆186Apr 8, 2026Updated 2 months ago
- USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE☆14Feb 26, 2021Updated 5 years ago
- Tool (with GUI) for easy downloading of lecture slides and other material from blackboard at Curtin☆18Mar 9, 2017Updated 9 years ago
- ☆13Dec 6, 2022Updated 3 years ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated last year
- Rapid mining of RNA structure motifs from profiling data.☆14Oct 20, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Jun 5, 2026Updated 2 weeks ago
- ISMB-24/Bioinformatics: Tertiary Structure-based RNA Inverse Folding with Generative Diffusion Models☆56Nov 17, 2024Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆63Aug 2, 2024Updated last year
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 2 years ago
- ☆17May 22, 2025Updated last year
- ☆14Nov 24, 2024Updated last year
- RNA sequence design for a target protein sequence