Differentiable RNA folding in JAX
☆31Mar 25, 2025Updated last year
Alternatives and similar repositories for jax-rnafold
Users that are interested in jax-rnafold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Eterna100-V2 benchmarking results and scripts☆14Sep 1, 2026Updated 2 weeks ago
- A fast and accurate RNA secondary structure, end-to-end approach prediction method.☆13Jan 2, 2025Updated last year
- ☆22Dec 20, 2024Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆15May 20, 2022Updated 4 years ago
- ☆23Jul 14, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- RNAView identifies base pairs that are formed in nucleic acid structures and classifies them according to the system of Leontis and Westh…☆21Jul 11, 2024Updated 2 years ago
- Codon Optimizer for mRNA Vaccine Design☆29Sep 25, 2024Updated last year
- Code repository of "Deep generative design of RNA family sequences"☆44Apr 8, 2026Updated 5 months ago
- Building Blocks for Equivariant Neural Networks in e3nn and PyTorch 2.0☆22Nov 16, 2025Updated 10 months ago
- Evaluating RNA structure prediction using diverse thermodynamic prediction tasks and high-throughput datasets.☆18Jun 10, 2022Updated 4 years ago
- Fully-Differentiable Tensor Spherical Harmonics in JAX☆22Apr 11, 2026Updated 5 months ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated 3 months ago
- RIblast is ultrafast RNA-RNA interaction prediction software based on seed-and-extension algorithm for comprehensive lncRNA interactome a…☆18May 9, 2023Updated 3 years ago
- A source code to replicate Sakaue S. et al. Nat Commun. 2020.☆15Oct 29, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆20Dec 5, 2024Updated last year
- ☆32Oct 3, 2023Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆25Sep 1, 2026Updated 2 weeks ago
- Scripts for the creation of CryptoBench, a new dataset of cryptic binding sites☆21Jun 24, 2026Updated 2 months ago
- ☆28Dec 19, 2025Updated 9 months ago
- Julia interface to ViennaRNA for RNA structure prediction and analysis☆23Apr 16, 2024Updated 2 years ago
- Python module to manipulate and visualize minimap2's cs tag☆11Sep 3, 2026Updated 2 weeks ago
- Bridging Smoothed Molecular Dynamics and Score-Based Learning for Conformational Ensembles☆21May 16, 2026Updated 4 months ago
- ☆17Sep 8, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- RiboNucleic Acid (RNA) Language Model☆175May 4, 2026Updated 4 months ago
- Collection of mRNA benchmarks☆53Sep 5, 2026Updated 2 weeks ago
- (ECCV 2026): Official code for Flash-BoN: Instant Drafts for Inference-Time Scaling in Diffusion Models☆23Jul 9, 2026Updated 2 months ago
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 3 years ago
- The LinearDesign mRNA design software.☆215Jun 4, 2024Updated 2 years ago
- Datasets for P2Rank project. https://github.com/rdk/p2rank☆31Nov 8, 2024Updated last year
- Steerable E(3) GNN in jax☆24Oct 1, 2023Updated 2 years ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆112Jan 11, 2025Updated last year
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆65Aug 2, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆44Sep 12, 2024Updated 2 years ago
- State of the art software for RNA sequence design. The first to solve the Eterna benchmark!☆16Jul 17, 2024Updated 2 years ago
- Soccer Trajectory Prediction Competition☆16Aug 28, 2025Updated last year
- 🔧rna-tools: a toolbox to analyze sequences, structures and simulations of RNA (and more) used by RNA CASP, RNA PUZZLES, and me ;-) docs …☆185Aug 10, 2026Updated last month
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Repository for mRNA Paper and CodonBERT publication.☆146May 19, 2026Updated 4 months ago
- Nucleic Acids Research 2024:RNA-MSM model is an unsupervised RNA language model based on multiple sequences that outputs both embedding a…☆70Jul 22, 2024Updated 2 years ago