UCBShift is a program for predicting chemical shifts for backbone atoms and β-carbon of a protein in solution. It utilizes a machine learning module that makes predictions from features extracted from the 3D structures of the proteins.
☆27Apr 9, 2026Updated 4 months ago
Alternatives and similar repositories for CSpred
Users that are interested in CSpred are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Software for the prediction of DEER and PRE data from conformational ensembles.☆14May 6, 2025Updated last year
- Build conformational representations of Intrinsically Disordered Proteins and Regions by a guided sampling of the protein torsion space☆35Jun 22, 2026Updated last month
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated 11 months ago
- Disordered protein ensemble prediction☆16Jun 11, 2026Updated last month
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆62Dec 16, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆15Jun 25, 2026Updated last month
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated 2 years ago
- Graph neural network for predicting NMR chemical shifts☆55May 6, 2022Updated 4 years ago
- Deep Neural Networks for Analysing NMR time domain data☆14Updated this week
- ☆13Jul 17, 2025Updated last year
- Interactive NMR peak deconvolution☆20Sep 17, 2025Updated 10 months ago
- The standalone version / cli-tool of SPOT-Contact-Single available for public use for research purposes.☆16Feb 1, 2024Updated 2 years ago
- DynamicGT: a dynamic-aware geometric transformer model to predict protein binding interfaces in flexible and disordered regions☆16Jun 18, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆18May 15, 2026Updated 2 months ago
- Implementation of methods to sample from Boltzmann distributions☆22Jan 24, 2023Updated 3 years ago
- Deep generative modeling of protein structural ensembles☆41May 27, 2026Updated 2 months ago
- A Newtonian message passing network for deep learning of interatomic potentials and forces☆46Apr 28, 2026Updated 3 months ago
- Precise Generation of Conformational Ensembles for Intrinsically Disordered Proteins with IDPFold☆28Sep 13, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆41Jul 9, 2023Updated 3 years ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆68May 8, 2026Updated 3 months ago
- ☆48Mar 7, 2026Updated 5 months ago
- A set of tools for analyzing molecular dynamics simulations☆13Jun 24, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Some notes (cookbook) for pyMol. Protein Crystallography course.☆17Jun 19, 2021Updated 5 years ago
- A simple library for handling NMR data in Julia☆14Jul 1, 2026Updated last month
- MolSSI SARS-CoV-2 Biomolecular Simulation Data and Algorithm Store☆31Dec 16, 2023Updated 2 years ago
- A Python implementation of Baffling Recursive Algorithm for Isotopic distributioN calculations☆23May 22, 2025Updated last year
- localCIDER - sequence analysis tool for disordered protein sequences☆26May 15, 2023Updated 3 years ago
- ☆16Dec 10, 2024Updated last year
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated last year
- List of papers on protein binding site prediction☆11Aug 11, 2023Updated 2 years ago
- Python package for protein sequence-based bidirectional recurrent neural network. Generalizable to a variety of protein bioinformatic app…☆21May 7, 2026Updated 3 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This repository includes the slides and the practicals for the course of Structural Bioinformatics of the MBB/QB degrees at the Universit…☆108Jan 29, 2026Updated 6 months ago
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆24Apr 10, 2026Updated 4 months ago
- bakerlab pymol scripts☆27Feb 6, 2020Updated 6 years ago
- Protocols and tools to run (automated) atomistic simulations of enzyme-ligand systems☆21Oct 11, 2021Updated 4 years ago
- Shrinking Proteins with Diffusion☆30Jan 8, 2026Updated 7 months ago
- PLaTITO is an open-source model for generative molecular dynamics of proteins.☆25May 6, 2026Updated 3 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago