A comprehensive benchmark on the performances of multiple protein backbone generative models.
☆65Feb 2, 2026Updated last month
Alternatives and similar repositories for Scaffold-Lab
Users that are interested in Scaffold-Lab are comparing it to the libraries listed below
Sorting:
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated 2 weeks ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- ☆15Mar 28, 2025Updated 11 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆76Jan 27, 2026Updated last month
- Fast protein backbone generation with SE(3) flow matching.☆317Jul 19, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- Generative diverse protein backbones by protein language model☆34Feb 27, 2026Updated 3 weeks ago
- ☆41Jun 12, 2025Updated 9 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- ☆23Jan 15, 2026Updated 2 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆81Sep 11, 2025Updated 6 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 4 months ago
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆214Apr 15, 2025Updated 11 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- Efficient manipulation of protein structures in Python☆65Sep 27, 2025Updated 5 months ago
- ☆214Sep 24, 2024Updated last year
- Public Release of ProGen3 family of Models☆104Jul 21, 2025Updated 8 months ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 8 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Jun 11, 2025Updated 9 months ago
- The official implementation of the ICLR'23 paper PiFold: Toward effective and efficient protein inverse folding.☆183Jun 17, 2023Updated 2 years ago
- Codes for our paper "Full-Atom Peptide Design with Geometric Latent Diffusion" (NeurIPS 2024)☆109Apr 16, 2025Updated 11 months ago
- Extension of ThermoMPNN for double mutant predictions☆56Oct 8, 2025Updated 5 months ago
- ☆135Jun 3, 2025Updated 9 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Oct 28, 2023Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- A Novel Approach for Protein Sequence Design Based on Secondary Strucure☆24Mar 7, 2025Updated last year
- ☆27Feb 10, 2024Updated 2 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Updated this week
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆30Jun 25, 2024Updated last year
- ☆12Dec 2, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- ☆96Oct 14, 2025Updated 5 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆376Feb 26, 2026Updated 3 weeks ago