Immortals-33 / Scaffold-LabLinks
A comprehensive benchmark on the performances of multiple protein backbone generative models.
☆61Updated last month
Alternatives and similar repositories for Scaffold-Lab
Users that are interested in Scaffold-Lab are comparing it to the libraries listed below
Sorting:
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆48Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Official repository of EnzymeFlow☆91Updated 7 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆62Updated 2 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆36Updated last year
- code for SeqDance/ESMDance, biophysics-informed protein language models☆38Updated 3 months ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆113Updated 4 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆87Updated last year
- ☆100Updated last month
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated 11 months ago
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆58Updated last year
- ☆108Updated 2 years ago
- Official implementation of "Learning the language of protein structures"☆36Updated 3 weeks ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- ☆70Updated 3 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆79Updated last month
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)☆40Updated last year
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆66Updated 2 weeks ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated 2 months ago
- Public Release of ProGen3 family of Models☆75Updated 2 months ago
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆96Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Code and Pre-Trained Models for "AttnPacker: An end-to-end deep learning method for protein side-chain packing"☆85Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- ☆65Updated last year